Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_027996.1 Length=175720 Score E Sequences producing significant alignments: (Bits) Value seq558 96.9 4e-15 >seq558 Length=819 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 8875 AAAACGACATAGTAATGGAtttttttGCGGGAAGTGGCACTACTCTAGCCGTTGCTCATA 8934 |||| || || ||| | ||||| ||| ||| || |||||||| ||| || || |||| Sbjct 591 AAAATGATATTGTATTAGATTTCTTTATGGGTTCTGCCACTACTCAAGCGGTAGCACATA 532 Query 8935 AAATGAAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAAACTATCACAAAAG 8994 ||||||| || ||| || || | ||||||||||| || || | ||| | | | Sbjct 531 AAATGAATCGTCAATATATTGGTGTTGAACAAATGGACTACATTAATACTGTATCTATCC 472 Query 8995 AAAGACTCaaaaaaaGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAAGCAATAAATTGG 9054 ||| | | ||||||| || || ||||||||||| ||| | | | || ||||| Sbjct 471 CAAG-GTTACAAAAAGTTATTGAGGGTGAGCAAGGCGGTGTTTCAACTGATTTAGATTGG 413 Query 9055 CAAGGTGGTGGAAATTTTGTTTATGCTGAA 9084 ||||||||||| |||||| |||| |||| Sbjct 412 CAAGGTGGTGGTTCTTTTGTATATGTTGAA 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562171966387200