Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq36 228 1e-54 seq93 152 6e-32 seq139 93.3 5e-14 seq13 89.7 6e-13 >seq36 Length=122865 Score = 228 bits (252), Expect = 1e-54 Identities = 627/958 (65%), Gaps = 7/958 (1%) Strand=Plus/Plus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 ||||| |||| || | || ||||||||||||||||| || | |||| ||||||| | Sbjct 115245 ATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTCATATTACTC 115304 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 |||| || |||||| |||||| |||| ||||||||| ||| | ||| ||||| Sbjct 115305 TTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAATTCTTGGTG 115364 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 |||| || |||||| | || ||||| ||| | || || ||| ||||||||| Sbjct 115365 GCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTCTCATTGACA 115424 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 ||||||||||| || || |||||| || || ||||| ||||| | ||||||| Sbjct 115425 TACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGAGCTGTGTAT 115484 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 111343 || | |||||| ||||| |||||||| || ||||| || | ||| | ||| || Sbjct 115485 TCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTGATTTGAT 115544 Query 111344 TTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTG 111403 || | || || |||||||| || |||||||| || || ||||| | |||| | Sbjct 115545 TTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCA 115604 Query 111404 AGAATAGCCTTCCAAACATCGGCGGCTGGTAC--AATGGCGTTGGCCCGTCCCTCCGCCT 111461 | ||| || ||||| || || | || | ||||| || || |||||| || Sbjct 115605 ATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGT--GCACGACCCTCCTTCT 115662 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 | || || | | | |||||| |||||| | | || | || || || || | Sbjct 115663 CATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGTCCAGGAGCTT 115722 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 | ||||| || || ||||| ||| | | |||| || | || ||| || | || Sbjct 115723 CATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAAATCAT 115782 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | ||||| |||| | ||||| | ||| || || | || || || Sbjct 115783 TCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTC 115842 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 || || | || || | ||||| | ||||| ||||| | ||| || || | | || Sbjct 115843 TCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTC 115902 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 | ||||| || ||| |||||| || || || || ||| |||| ||||| ||||||| Sbjct 115903 CTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCA 115962 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 | ||||| | |||| || || || || || ||||| ||| | ||| | | Sbjct 115963 TGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAA 116022 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | ||| | | || || ||||| ||||| | ||| || || |||||| | | | Sbjct 116023 TGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACACGTCTTGA 116082 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | || ||||| || || || || || |||| | | ||||||| || Sbjct 116083 GTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCA 116142 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 | || || | || ||||||||||||||||| || || | ||||| ||||||||||| Sbjct 116143 TTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATGAACATACC 116200 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 |||||||| ||||| ||||||||||||||||| ||||| |||||| || ||||||||| Sbjct 114894 GTGTATGGCTCAAAACATTCATTATTACCCAAAATTTGACTGGTGGATGCAGTTGGCATT 114953 Query 110780 GGTGCCATCAAAAGACTGTTACGAA 110804 || || | | | ||| ||||||| Sbjct 114954 GGAGCAACAAGTAAACTATTACGAA 114978 >seq93 Length=103736 Score = 152 bits (168), Expect = 6e-32 Identities = 351/520 (68%), Gaps = 13/520 (3%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| | || |||||||| ||||| | |||||| |||||| | || Sbjct 84870 GCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCA 84929 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| | |||||||| |||| | || | ||||| || || ||||||||| Sbjct 84930 GGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATA 84989 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || |||||||| ||||| |||| | ||||| || || || | | | | | | Sbjct 84990 CCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTTA---TCCGAGTTGATC 85046 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAA 122897 ||||||| ||||| |||||||| | || |||| ||||| | ||||| || || Sbjct 85047 CATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAG 85106 Query 122898 TAACTGCTTCTTT-TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956 || ||||| || | ||||||||||| | ||||| | ||||||| | | Sbjct 85107 AGACGATGTCTTTCTCTCGT--GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCT 85164 Query 122957 CGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 123014 | |||||| | ||| |||||| ||| || | ||||| | | ||||| || Sbjct 85165 CTGCATGAATATTCTCA--ATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAAT 85222 Query 123015 CTGAACCTCATCCGCAAAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAG 123073 ||||| ||| || |||||||| | | |||||| ||||| |||||||| ||| Sbjct 85223 TTGAACTTCAGCC-ATAAATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAG 85281 Query 123074 CAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGT 123133 ||||||| |||| | ||| ||||| | | |||||| ||| || || | ||| | Sbjct 85282 CAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATT 85341 Query 123134 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||| |||| || | ||| |||||||| |||||||| Sbjct 85342 GAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCA 85381 >seq139 Length=139714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 176/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 164596 ATGGTGTGTATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAG 164655 ||||| ||||| | ||||| ||||| || || | ||||||||| || || | | Sbjct 139269 ATGGTTATTATGGAAGAGTTGCTCCACGTTCGGGATTGGCTGTGAAGAATTTCATAGATG 139328 Query 164656 TTGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATC 164715 ||||||| |||||| | ||| |||| |||| ||| | | ||| | | ||||| | Sbjct 139329 TTGGTGCAGGTGTTGTAGATTCCGATTATAGAGGAAATTTGGGAGTGTTGTTATTCAACC 139388 Query 164716 ACGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGC 164775 | || || |||||||| | | || ||| || || || |||||| |||| |||||| Sbjct 139389 ATGGTGATGAAGACTTTAAAATTGCGAGAGGAGACCGAATTGCACAATTTGTGATTGAGC 139448 Query 164776 GCTGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGG 164835 || || ||| | | ||| ||| || | | || || ||||| |||| || | Sbjct 139449 AAATTGCTTTGCCAGATATTGTAGAAGTTGATGATTTGGATGAAACGGAACGAGGAGCAG 139508 Query 164836 GTGGATTTGGATCTACTGG 164854 | ||||||||||| ||||| Sbjct 139509 GCGGATTTGGATCCACTGG 139527 >seq13 Length=365397 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 9429 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 9488 ||||||||| | | || || |||||||||||||| || ||||| ||||||||||| ||| Sbjct 115772 TTGGGTAACTTGGATGCTGAAAGAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATG 115713 Query 9489 TGGCTCATGCTTCAACAAGAGGAA 9512 ||||||||| | || |||||| || Sbjct 115712 TGGCTCATGTTACAGCAAGAGCAA 115689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027493870400