Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq36 219 5e-52 >seq36 Length=122865 Score = 219 bits (242), Expect = 5e-52 Identities = 625/958 (65%), Gaps = 7/958 (1%) Strand=Plus/Plus Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 ||||| |||| || | || || ||||| | ||||| || ||||||||||||||| | Sbjct 115245 ATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTCATATTACTC 115304 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || | ||| ||| || |||||| ||||| | || || | | | || | ||| |||||| Sbjct 115305 TTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAATTCTTGGTG 115364 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697 ||| || |||||| | | ||| | ||| | | || ||| ||||||||| Sbjct 115365 GCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTCTCATTGACA 115424 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 ||||| ||||| || || |||| |||||||||| ||||| | | ||||| Sbjct 115425 TACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGAGCTGTGTAT 115484 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || |||||||| || |||||||| || || || || || | || | ||||||||| Sbjct 115485 TCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTGATTTGAT 115544 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 ||| | ||||| |||||||| ||||||||||| || || ||||| |||| | || Sbjct 115545 TTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCA 115604 Query 118878 AGAATAGCCTTCCAGACATCGGCAGCTGGCAC--AGTGGCGTTGGCTCGCCCCTCTTCCT 118935 | ||| || ||| | || ||| | || ||||| || || ||||| | || Sbjct 115605 ATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGT--GCACGACCCTCCTTCT 115662 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995 | || || | | | ||||||||||||| | || | || || || || | Sbjct 115663 CATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGTCCAGGAGCTT 115722 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 || || || ||||| ||||| ||| | |||||| || | || ||| || | || Sbjct 115723 CATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAAATCAT 115782 Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115 | ||| | || | || | ||| ||| ||| ||| || | || ||| | Sbjct 115783 TCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTC 115842 Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 119175 ||| || ||||| || | ||||| | ||||| || |||| || || || | | | Sbjct 115843 TCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTC 115902 Query 119176 CCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 | || || || |||| | || | || || | |||||| |||| ||||||||||||| Sbjct 115903 CTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCA 115962 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 119292 | ||||||| |||| ||| || || || || ||||| || | ||| | | Sbjct 115963 TGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAA 116022 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | || | | || || ||||| || || | ||| || || || ||| | ||| Sbjct 116023 TGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACACGTCTTGA 116082 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | | |||| || || || || || | || | || | | |||||| || Sbjct 116083 GTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCA 116142 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC 119470 ||||||| |||| |||||||| ||||||||||| || | ||||||||||||||||| Sbjct 116143 TTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATGAACATACC 116200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 287/439 (65%), Gaps = 10/439 (2%) Strand=Plus/Plus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 || ||||| || ||||| | |||| |||| ||||| | ||||| || |||| ||| Sbjct 114543 TAATACATTCCAGTCTTCAATCCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTTG 114602 Query 117903 GAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 117962 |||| || |||| | | || |||| || | ||| |||||||| ||||| | | Sbjct 114603 GAGATGGATGGAGTGGCAATAAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCT 114662 Query 117963 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGG 118022 | || || | ||| | || | ||| ||||||||||| |||||| |||| | Sbjct 114663 CTCTCAATGGCAAGATCCAACAAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAAT 114722 Query 118023 TTCTTAATATCATCTGGGATATCCA-CGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||||||||||||||| || |||| | || ||||| || || ||| ||| | || Sbjct 114723 TCCTTAATATCATCTGGAAT-TCCAGCAATGTTTTGAATAGA---ACCTCTGTTGGCAAT 114778 Query 118082 GAGATCCTTCATATCCTTTGA---CCAGA-GACCAATCTTTTTGAGATCCTCCACGAGAT 118137 | | |||| | ||||| ||| | |||| | | || || || | || Sbjct 114779 AATTTGATTCACAATATTTGAATTCCACATTCCCAAACGAATCAAG-TCAGATACTAAAT 114837 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 | | || | || | | ||||| | | |||||| ||| | ||| | |||| Sbjct 114838 GTCTGTTAATGACTGGATATTCACCACTCAAGACACGTCTCGTATACACATTCGAAGTGT 114897 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 |||||||||| || ||||| |||||||| ||||| ||||| || || ||||| || | Sbjct 114898 ATGGCTCAAAACATTCATTATTACCCAAAATTTGACTGGTGGATGCAGTTGGCATTGGAG 114957 Query 118258 CCATGAGAAGGCTGTTACG 118276 | | || | || ||||| Sbjct 114958 CAACAAGTAAACTATTACG 114976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430762727440