Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq36 203 4e-47 seq93 125 8e-24 seq13 84.2 3e-11 >seq36 Length=122865 Score = 203 bits (224), Expect = 4e-47 Identities = 619/951 (65%), Gaps = 7/951 (1%) Strand=Plus/Minus Query 104309 GGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATG 104368 ||||||||||| ||||| | || || ||||||||||||||||| || | || |||||| Sbjct 116200 GGTATGTTCATCCACGCCTCTCCTACTCTCTTCAATGCTGGTACTCCCACTCCTCAAATG 116141 Query 104369 TCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTT 104428 ||||||| | | |||| || || || || || ||||| || | || || Sbjct 116140 AGTTCTTGCTTCTTAGTGGCCATGAAAGACGATTCCATTTCAGGTATTTACGATACACTC 116081 Query 104429 ACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTG 104488 | | |||||| || || ||| | ||||| ||||| || || | | ||| | | Sbjct 116080 AAGACGTGTGCCTTGATATCCAAGAGTGCTGGTGGTATCGGCTTGTCCGTTCATAACATT 116021 Query 104489 AGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATG 104548 | ||| | ||| ||||| || || || || || |||| | ||||| ||| Sbjct 116020 CGTGCCTCTGGATCCTACATTCGAGGAACCAACGGAACCTCCAATGGACTCATTCCCATG 115961 Query 104549 CTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGA 104605 ||||| ||||| |||| ||| || || || || |||||| ||| || ||||| ||| Sbjct 115960 CTTCGTGTATTCAACGACACTGCCCGTTACGTGGATCAAGGTGGTGGTAAACGAAAAGGA 115901 Query 104606 TCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGT 104665 | | || || ||| | ||||| ||||| | ||||| | || || | || ||| | Sbjct 115900 GCCTTTGCCGTTTATTTGGAGCCTTGGCATTCCGATATTTTTGATTTTTTAGATTTGAGA 115841 Query 104666 CTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCA 104725 || || | ||||| || || ||| | || | | | | ||| | Sbjct 115840 AAGAATACTGGAAAGGAGGAAATTCGAGCTCGAGATTTGTTTTTGGGTTTGTGGGTGAAT 115781 Query 104726 GATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAG 104785 ||| | || ||| ||||||| ||||| | ||||||| ||||||||||| | | Sbjct 115780 GATTTGTTTATGGAGAGAGTGAAGGAGGATTCTCATTGGTCACTCTTTTGTCCTAATGAA 115721 Query 104786 GCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || ||||| || | |||| |||||| |||||| | | | || || ||| Sbjct 115720 GCTCCTGGACTTGCTGATGTGTGGGGTGAAGAGTTTAATGAATTGTATTTGCGTTATGAG 115661 Query 104846 GAAGAAGGTCGGGCGA-CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAA 104904 | || ||||| || | | | || | | ||| || | ||| || ||| | | Sbjct 115660 AAGGAGGGTCGTGCACGCCGTGTCGTT-CGTGCTCAAGAGCTTTGGTTTGCAATTATTGA 115602 Query 104905 GTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAG 104964 | | |||| ||||||||| || ||||||||||| || || || ||||| ||| Sbjct 115601 GGCACAAATTGAGACTGGTGTTCCTTACATGCTTTATAAGGATGCATGTAATAGAAAATC 115542 Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATT 105024 |||||| | ||| | || |||||| ||||| | ||||| ||||| | |||| Sbjct 115541 AAATCAACAAAATCTTGGAACGATCAAATCCTCCAACTTGTGTACTGAAATTATTGAATA 115482 Query 105025 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 |||| |||||| |||||||||||| | ||| || || || || |||||||| Sbjct 115481 CACAGCTCCAGATGAAGTAGCTGTGTGTAACTTGGCAAGTATTGCACTTCCAAAGTATGT 115422 Query 105085 GGATCCAGA-GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA 105143 || ||| |||| || | ||| ||||| || | ||| || |||| || || Sbjct 115421 CAATG-AGACGACACGTACCTACGATCATGAACAATTGTTTGAAATTGTCAAAATTGCCA 115363 Query 105144 CCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAAT 105203 |||| || | |||| | ||||| | |||| ||| || |||||| ||| | || Sbjct 115362 CCAAGAATTTGAACAAGATCATTGACAAGAATTATTATCCAGTTGAGGAAGCTAGAAAGA 115303 Query 105204 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 |||||||||||| ||||| |||||| | ||||||||||| | || |||| Sbjct 115302 GTAATATGAGACATCGTCCCATTGGTTTGGGTGTTCAGGGATTGGCCGATG 115252 Score = 113 bits (124), Expect = 5e-20 Identities = 294/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Minus Query 105501 TTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 ||||||| ||| | || | |||||||||||||| || |||||| ||||| ||||||| Sbjct 114978 TTCGTAATAGTTTACTTGTTGCTCCAATGCCAACTGCATCCACCAGTCAAATTTTGGGTA 114919 Query 105561 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAG 105620 |||||||||| ||||| || ||||| |||| | ||| |||| | | | || | Sbjct 114918 ATAATGAATGTTTTGAGCCATACACTTCGAATGTGTATACGAGACGTGTCTTGAGTGGTG 114859 Query 105621 AGTTT---GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG- 105676 | | | || ||| |||| ||| | || |||| | | | || | ||| Sbjct 114858 AATATCCAGTCATT---AACAGACATTTAGTATCTGACTTGATTCGTTTGGGAATGTGGA 114802 Query 105677 --TCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG-TG 105733 || || | |||| | | || | || | ||||| |||||||| |||| || Sbjct 114801 ATTCAAATATTGTGAATCAAATTATTGCCAACA---GAGGTTCTATTCAAAACATTGCTG 114745 Query 105734 GATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGAT 105793 || |||||| |||| |||||| | |||||| || |||||||||||||| ||| | Sbjct 114744 GA-ATTCCAGATGATATTAAGGAATTGTACAAGACTGTTTGGGAAATCAAACAAAAGAGT 114686 Query 105794 GTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTC 105853 | | || | ||| || | | || |||||||||||| |||| | ||| || Sbjct 114685 TTGTTGGATCTTGCCATTGAGAGAGCTCCATTCATTGATCAATCTCAATCACTCAATGTC 114626 Query 105854 TTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAG 105913 || || | | |||| | || ||||| | ||||| |||||| | || ||||| ||| Sbjct 114625 TTTATTGCCACTCCATCCATCTCCAAAATGTCTTCCATGCACTTTTATGCTTGGAGTAAG 114566 Query 105914 GGTCTCAAAACGGGGATGTATTA 105936 || | || || || |||||||| Sbjct 114565 GGATTGAAGACTGGAATGTATTA 114543 >seq93 Length=103736 Score = 125 bits (138), Expect = 8e-24 Identities = 350/525 (67%), Gaps = 23/525 (4%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGAT-TTGGACGATTGGAAGACTCTAAATGA 94499 |||||||||||||| || |||||| | ||| ||| | || |||| ||||| ||| Sbjct 85381 TGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCTCAATGGGAA-ACTCTCAATAC 85323 Query 94500 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGT 94559 |||||| | | ||||| || | |||| |||||||||| |||||||| ||||| Sbjct 85322 CAATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGT 85263 Query 94560 TTTTGAGAATATCAAT-AACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCT 94618 |||||| | | ||||| ||| | ||| || ||| ||||||| |||| | Sbjct 85262 GAATGAGAACTTGTGTCAACAA-TTTATGGCTGAAGTTCAAATTCCTGAAGCCAGATGTT 85204 Query 94619 TCTATGCGTATCAG--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTC-- 94674 |||||| | || || ||| ||| | | |||| |||| || | ||||| Sbjct 85203 TCTATGGATTCCAAATTGCCAT--TGAGAATATTCATGCAGAGATGTAT--TCAACTCTA 85148 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGA-AGCAGCTCTTTGAAGCCATCCAAAC 94733 || || | || |||||||| || |||| | | ||||| | ||||| | || Sbjct 85147 ATTGAAACCTACATTAAGGACACGAGAGA-AAGACATCGTCTCTTCAATGCCATTGATAC 85089 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793 ||||| | |||||||||| || ||||||| |||| ||| | || ||| Sbjct 85088 TGTTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGGATC------AACTCGGA 85035 Query 94794 TTCCTT---TGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||| |||||| ||| | | || ||||| ||||| || ||||||||||| ||| Sbjct 85034 TAACTTGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAAGGTATCTTCTTTAGTGG 84975 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || ||||| | || | |||| | |||||| ||||| | ||||| || | |||||| Sbjct 84974 ATCTTTCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGATGCCTGGATTGACCTTCTC 84915 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| || | || ||||| || || ||| | ||| || ||||| Sbjct 84914 CAATGAATTGATTTCTCGAGATGAAGGATTACACACGGACTTTGC 84870 >seq13 Length=365397 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 7505 TTGGGTAACATAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 7564 ||||||||| | | || | |||||||||||||| || ||||| ||||||||||| ||| Sbjct 115772 TTGGGTAACTTGGATGCTGAAAGAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATG 115713 Query 7565 TGGCTCATGCTTCAACAAGAGGAA 7588 ||||||||| | || |||||| || Sbjct 115712 TGGCTCATGTTACAGCAAGAGCAA 115689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256615103760