Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq93 132 5e-26 >seq93 Length=103736 Score = 132 bits (146), Expect = 5e-26 Identities = 220/309 (71%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| || | |||||||||| ||||||||||| || || | | ||| Sbjct 84870 GCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCA 84929 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | || | |||||||| ||||||||||| |||||| || ||||| |||||||| Sbjct 84930 GGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATA 84989 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAA 74930 ||||| ||||| |||||||| | | |||| || ||| ||| || | ||||| Sbjct 84990 CCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTTATCCGAGTTGATCCAT 85049 Query 74931 GTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAG 74989 || |||||| ||| ||| ||||| || | || |||||||| || || | |||||| Sbjct 85050 TTCAAAGCCCAACGAGC-CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAG 85108 Query 74990 --GCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTC 75046 | | | ||||| ||| | ||||| | | || || ||||| | | ||| ||| |||| Sbjct 85109 ACGATGTCTTTCTC-TCGTG-TCCTTAATGTAGGTT-TCAATTAGAGTTGAATACATCTC 85165 Query 75047 CGAATGAAT 75055 | |||||| Sbjct 85166 TGCATGAAT 85174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212073725200