Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq42 132 5e-26 seq29 118 1e-21 seq82 107 2e-18 seq151 104 3e-17 seq120 104 3e-17 seq76 102 9e-17 >seq42 Length=292872 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || |||||||| ||||| || || || || Sbjct 165484 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCCAAC 165543 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| || || || |||||||| |||||||| || || || Sbjct 165544 GACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 165603 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||||||||| ||| | || || | | ||| | | ||||| || Sbjct 165604 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 165663 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||||||||| || | |||||| Sbjct 165664 ATCCAAAAGGAATCCACTCTCCACTTGGTCTTG 165696 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | ||||| ||||| |||||||||||||||||||| | Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || | || || || |||||||| |||||||| |||||||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || |||||| | || || | | ||| | | || || || Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 27586 GTCCAAAAGGAATCCAC 27602 | ||||| ||||| || Sbjct 165892 ATTCAAAAAGAATCAAC 165908 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| |||||| | || ||||| || Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||||||||| ||| | || || | | || || | ||||| || Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 27586 GTCCAAAAGGAATCCAC 27602 | |||||||||||||| Sbjct 166120 ATTCAAAAGGAATCCAC 166136 Score = 125 bits (138), Expect = 8e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || |||||||| ||||| | || || || || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| | ||| | || || || || ||||| || |||||||||||||| Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | | ||||| |||||||||||| | || |||| | ||||| | || || || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||| || || |||||||| || || ||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTG 166380 >seq29 Length=427163 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || ||||||||||| |||||||| || || || Sbjct 48555 ATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAAC 48614 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || || || |||||||| |||||||| || || || Sbjct 48615 GACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 48674 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || |||||| | || |||| | ||| | | ||||| || Sbjct 48675 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAAC 48734 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | ||||||||||||||||| || || ||| Sbjct 48735 ATTCAAAAGGAATCCACTCTCCACCTTGTC 48764 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || || ||||| || ||| | || ||||| || Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||| | || ||||| || |||||||| ||||| ||||| || Sbjct 49108 CGACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCA 49167 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||| |||||||||||| | || |||| | ||||| | || || || Sbjct 49168 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAA 49227 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||||||||| |||||||| || || Sbjct 49228 CATCCAAAAGGAATCAACTCTTCACCTTGT 49257 >seq82 Length=211372 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | ||||| ||||| || ||| | ||||| || || Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||| | || ||||| |||||||| || ||||||||||| || Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | | || ||||| || |||||| | || |||| | ||| | | ||||| || Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||| || | || | |||||| Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTG 147720 >seq151 Length=76492 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||| | ||||||||||| ||||| || | || || || | || |||||||| | Sbjct 50809 ATGCAATTATTTGTCAAGACACTTACAGGTAGAACGATCACATTGGATGTTGAGTCCAAT 50868 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524 || |||| ||| | || | ||| ||| || ||||| || ||||| | || || Sbjct 50869 GACTCAATTGAGAATGTTAAA-CAGAAAGTCACAGATAAGGAAGGTATTCCAGCGGATCA 50927 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | |||| ||||||||||||| | ||||||| | || || | || ||||| Sbjct 50928 ACAGCGTTTGATTTATGCTGGTAAGCAATTGGAGGATGGAAGAACTTTATCGGATTATAA 50987 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 ||| |||||||| | |||||||| Sbjct 50988 TGTACAAAAGGATGCAACTCTTCA 51011 >seq120 Length=320511 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||| | |||||||| || || || || | ||||| || | ||||||||||| | Sbjct 61043 ATGCAACTATTTGTCAAAACACTCACTGGTAGAACTATCACATTGGAGGTTGAGTCTAAT 60984 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||| ||||| || ||||| |||||||| | || || Sbjct 60983 GACTCGATTGAGAATGTGAAGAGCAAAATCACAGATAAGGAAGGAATTCCAGCTGATCAA 60924 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || | ||| || |||||| | ||||||| | || || | ||||| || Sbjct 60923 CAGCGTTTGATCTATGCAGGCAAGCAATTGGAGGATGGAAGAACACTCTCTGACTACAAC 60864 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 || |||||||| | || |||||| | ||||| Sbjct 60863 GTTCAAAAGGATGCTACCCTTCATTTGGTCTT 60832 >seq76 Length=223365 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || || || |||||||| || ||||||||||| || || | | ||| Sbjct 84442 AATGTGAAGTCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATT 84383 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||||||||||||| | ||||||| | || | | ||||| || | ||||||||| Sbjct 84382 TTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCTGACTACAACATTCAAAAGGAA 84323 Query 27598 TCCACTCTTCATCTAGTCTTG 27618 |||||||| || | |||||| Sbjct 84322 TCCACTCTCCACTTGGTCTTG 84302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306308022880