Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq151 109 3e-19 seq42 107 1e-18 seq29 102 5e-17 seq26 93.3 3e-14 seq120 89.7 3e-13 seq76 89.7 3e-13 >seq151 Length=76492 Score = 109 bits (120), Expect = 3e-19 Identities = 177/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||||| ||| || ||||| |||||||| | |||||||| || Sbjct 51035 CCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGAT 50976 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | || || | ||| ||||| ||| | || ||||||||||| |||| || Sbjct 50975 AAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGGA 50916 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||||||| |||| |||||| | ||||| ||| | | ||| || Sbjct 50915 ATACCTTCCTTATCTGTGA-CTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCAAC 50857 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG-ATTGTAT 34717 |||| || |||||| |||| || | || || ||||| | ||||||||| || | | Sbjct 50856 ATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTTGTTTTTTTT 50797 Query 34718 GACGTTGAAAA 34728 || |||| ||| Sbjct 50796 GATGTTGGAAA 50786 >seq42 Length=292872 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | ||| ||||| || | || || ||||||||||| ||||| || Sbjct 165938 CCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGAC 165879 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | ||| || |||||||| || | | |||||||| || || Sbjct 165878 AAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGA 165819 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| |||| ||||||| | ||| || || | | ||| || Sbjct 165818 ATTCCTTCCTTGTCTTGGATC-TTTGATTTAACGTTTTCAATGGTATCATTGGACTCAAC 165760 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || ||||| || ||||| || || || ||||| Sbjct 165759 CTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| || || || || |||| ||||||| | ||||||||| ||||| Sbjct 166130 TCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAA 166071 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634 || ||||| ||||| || || || | || ||||| ||| ||| || | || ||| Sbjct 166070 ATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT-TGAATCTTGCTCTTCACGTT 166012 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || ||||| | | || ||||||| || || || ||||| || | || || || Sbjct 166011 TTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGAC 165952 Query 34695 AAAAATCTGCAT 34706 || || ||||| Sbjct 165951 GAAGATTTGCAT 165940 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| ||| ||||||||||| ||||| || || |||| | ||||| | ||| Sbjct 166370 TGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCCATCTTCCAATTGC 166311 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || || | |||||||| || || | || ||||| ||| |||| || Sbjct 166310 TTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATC-TT 166252 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || || || | | || ||||||| || || || || || || Sbjct 166251 TGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAATGGTCTTGCCAGT 166192 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || ||||| Sbjct 166191 CAAAGTTTTAACAAAGATTTGCAT 166168 >seq29 Length=427163 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||||||||||| || || || | |||| | ||||| | ||| Sbjct 48757 TGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGC 48698 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | | ||||| || || || | ||| ||||||||| |||| || Sbjct 48697 TTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATC-TT 48639 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 |||| ||| | |||||||| | | || ||||| | || || || || || || Sbjct 48638 GCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGT 48579 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 ||| || || || || || ||||||||||| || Sbjct 48578 TAAAGTCTTGACGAAGATTTGCATGTTGATGGT 48546 >seq26 Length=133099 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||||||||| | || ||||| |||| | | ||||| || | |||| | || Sbjct 73274 CAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAGGTTCTTCCATC 73215 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT-CCTTGT 34612 || | |||||| || || || || || || ||||| || ||| | | ||||| |||| | Sbjct 73214 CTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATC-GGCTGGAATCCCTTCCTTAT 73156 Query 34613 CTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATC 34671 | | || ||| | || ||| | || | ||| | | ||| ||||||| ||| || Sbjct 73155 CGGCTAT-TTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGGTAATG 73097 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 || ||||| || || ||||||||||| || |||||||||| ||| Sbjct 73096 GTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTTGAATGT 73053 >seq120 Length=320511 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||| || || |||||||||| ||| || || || ||||||| | || Sbjct 60832 AAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAGAGAGTGTTCTTCCATCC 60891 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||| || || ||| | || ||||||||||| || | || | ||| ||||| ||| Sbjct 60892 TCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTGGAATTCCTTCCTTATCT 60951 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||||| ||| | || || | ||| | ||| | ||| || |||| || || || Sbjct 60952 GTGAT-TTTGCTCTTCACATTCTCAATCGAGTCATTAGACTCAACCTCCAATGTGATAGT 61010 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| || | ||||| ||||| | |||||||| Sbjct 61011 TCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTT 61046 >seq76 Length=223365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| ||||||||| |||||||||||||| || || || Sbjct 84288 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 84347 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || || | ||| ||||| ||||| || || | ||||| || || || Sbjct 84348 AATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGA 84407 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | || ||||||||| ||||||| Sbjct 84408 ATACCTTCCTTGTCTTGGATCTTT 84431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727398269742