Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq42 154 1e-32 seq29 134 1e-26 seq82 125 6e-24 seq120 114 1e-20 seq151 105 6e-18 seq38 102 7e-17 seq76 82.4 7e-11 >seq42 Length=292872 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| |||| ||||| ||||| ||| | | Sbjct 165484 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCCAAC 165543 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || ||| || || |||||||| ||||| || ||||| |||||| Sbjct 165544 GACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 165603 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || ||||||||||||||| | ||| | ||||| |||||| Sbjct 165604 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 165663 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| ||| | ||| | ||||| || Sbjct 165664 ATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGTAT 165713 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| |||||| | ||||| | ||||| ||| | Sbjct 166168 ATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAAT 166227 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| ||| || ||||| || |||||||| || || || ||| Sbjct 166228 GATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 166287 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || || ||||||||||| | ||| | |||||||||||| Sbjct 166288 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAAC 166347 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| ||||| || | || | |||||| | ||| |||| || Sbjct 166348 ATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 125 bits (138), Expect = 6e-24 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| ||||||| ||| | ||||||||||| || || |||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGA---GTCC 165768 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || | ||||| | || ||| ||| || |||||||| ||||| || ||||| || Sbjct 165769 AATGATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGAC 165828 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| | | || | ||||| || ||||| |||||| | ||| | || |||||| Sbjct 165829 CAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTAC 165888 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||| || || || || || ||||||||| Sbjct 165889 AACATTCAAAAAGAATCAACATTGCACTTGGTTTTG 165924 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | |||||| | ||||| ||| | | Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || |||||||| || ||||| || ||||| |||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || ||||||||||||||| | || | ||||| |||||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 27168 ATTCAAAAGGAGTCGACCTTACA 27190 ||||||||||| || || || || Sbjct 166120 ATTCAAAAGGAATCCACATTGCA 166142 >seq29 Length=427163 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || ||| | || ||| | ||||| ||| | | Sbjct 49049 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAAC 49108 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| |||||||| || || || || ||||| |||||| Sbjct 49109 GACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCAA 49168 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||||||||||| | ||| |||||||||||||| Sbjct 49169 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAAC 49228 Query 27168 ATTCAAAAGGAGTCGAC 27184 || |||||||| || || Sbjct 49229 ATCCAAAAGGAATCAAC 49245 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||| | || |||||| |||| ||||||||||| ||| | Sbjct 48554 CATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAA 48613 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || ||| || || |||||||| ||||| || ||||| ||||| Sbjct 48614 CGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCA 48673 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||| || ||||| ||||| | ||| | ||||| ||||| Sbjct 48674 ACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAA 48733 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||||||||| || || Sbjct 48734 CATTCAAAAGGAATCCAC 48751 >seq82 Length=211372 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||||| ||| | || ||| | || || ||| | | Sbjct 147932 ATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAAC 147873 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| ||||||||||| ||||| || || || |||||| Sbjct 147872 GACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 147813 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || ||||||||||| | ||| | || || |||||| Sbjct 147812 CAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAAC 147753 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || || || ||||| ||| | ||| | || || Sbjct 147752 ATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq120 Length=320511 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| | ||||| ||||| | || || || |||| || | ||||| || | | Sbjct 60815 ATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAAC 60756 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || |||||| || ||||| || || ||| |||||||| Sbjct 60755 GACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCAA 60696 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| ||||| |||||||||||||| || | || | || ||||||||| Sbjct 60695 CAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAAC 60636 Query 27168 ATTCAAAAGGAGTCGACC 27185 | ||||| || |||||| Sbjct 60635 TTGCAAAAAGATTCGACC 60618 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||||| ||||| || || || | |||| || | || || || | Sbjct 61044 CATGCAACTATTTGTCAAAACACTCACTGGTAGAACTATCACATTGGAGGTTGAGTCTAA 60985 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||||| || || ||||| ||| || ||||| || ||| | ||||| Sbjct 60984 TGACTCGATTGAGAATGTGAAGAGCAAAATCACAGATAAGGAAGGAATTCCAGCTGATCA 60925 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || || || ||||| |||||||| || | || | || || ||||| Sbjct 60924 ACAGCGTTTGATCTATGCAGGCAAGCAATTGGAGGATGGAAGAACACTCTCTGACTACAA 60865 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||||| | ||| | |||||||| || | ||| | ||||| || Sbjct 60864 CGTTCAAAAGGATGCTACCCTTCATTTGGTCTTAAGATTGAGAGGTGGAAT 60814 >seq151 Length=76492 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||| || || ||| |||| || ||| | || || |||||| || |||| Sbjct 51037 ATGCAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGA---GTCC 51093 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||||||||||||| || || ||| ||| || || ||||| || ||| | ||| Sbjct 51094 AATGACTCGATTGAGAACGTGAAGAGAAAGATTTGTGATAAGGAAGGTATTCCAGCGGAT 51153 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| |||||||| ||||| || ||||||||||| || | || ||||| || || Sbjct 51154 CAACAACGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTAT 51213 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 | | | ||||| || || || | ||| | |||||| | |||| || || Sbjct 51214 AGCTTGCAAAAAGATTCAACTATCCATCTTGTTTTGAGACTGCGAGGAGG 51263 >seq38 Length=237352 Score = 102 bits (112), Expect = 7e-17 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||| || ||||| || || || | | || || | || || || |||| Sbjct 109519 ATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGA---GTCC 109463 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||||||||||||| || ||||| ||||| ||| || |||||||| ||| | ||| Sbjct 109462 AATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGAT 109403 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||||| || || || || |||||||| || || | || | || |||||| Sbjct 109402 CAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTAC 109343 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | |||||||| | || | || ||||| ||| | || || ||||| || Sbjct 109342 AATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGGTAT 109290 >seq76 Length=223365 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || ||| || |||||||| ||||| || || || ||||| Sbjct 84455 CGACACCATCGAGAATGTGAAGTCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCA 84396 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || |||||||| || | || | || || ||||| Sbjct 84395 ACAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCTGACTACAA 84336 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||| || || | || ||||| ||| | ||| | ||||| Sbjct 84335 CATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 84288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915279460480