Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_028775.1 Length=43098 Score E Sequences producing significant alignments: (Bits) Value seq565 361 2e-95 seq554 80.6 7e-11 >seq565 Length=3067 Score = 361 bits (400), Expect = 2e-95 Identities = 229/245 (93%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 20453 GTTGAGTTACTAGGTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCA 20512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3067 GTTGAGTTACTAGGTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCA 3008 Query 20513 TCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACAT 20572 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3007 TCTTATGTAATTAATGGTCCTGGTAAAACTAATGAATATGCATACTAATAGTAGTTACAT 2948 Query 20573 AAATTAAAAGGTAG-ATATTTCTTTTTATATAAAG---TTGCAGACATTTCATAACTTGC 20628 ||| ||||||| | | ||| ||||||||||||| | |||||||||||||||||||| Sbjct 2947 AAAGCAAAAGGTGGCTTTTTTTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGC 2888 Query 20629 CAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAT 20688 |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 2887 CAAACCTTTATATA--TAATTATCAAACTGCGCTAAAATTACCAAAACTGCTTATTCTAT 2830 Query 20689 TACCT 20693 ||||| Sbjct 2829 TACCT 2825 >seq554 Length=1012 Score = 80.6 bits (88), Expect = 7e-11 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19803 AAAAACT-AGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTC 19861 ||||| | ||||||||||||| | || ||||||| ||| |||||||||||||||||||| Sbjct 437 AAAAAGTCAGCCCGAAGGCTAACGTACAAATAGATTAAATTTTGAACACATTGCTGTGTC 378 Query 19862 TAAGATAAATATAGCA 19877 ||| | | ||||||| Sbjct 377 TAAAACGATTATAGCA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137791060775280