Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq157 87.8 1e-12 >seq157 Length=153911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 210/316 (66%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 118322 ACAGAGCCATCTGCATGTGTATGGTGGGAGCATGTTTGTAGTTTTCCAAAATAAAATCTT 118381 ||| |||||| | ||| | || || ||| | ||| || | || ||| | |||||||| Sbjct 125653 ACACAGCCATTTCCATCTTGATCGTAGGATGAGGTTCATAATCTTTCAATACAAAATCTT 125594 Query 118382 CAAACTTAAAGTCTTCTATATTTTTGATATCCTTG--TTTATGGATAGTGTGGGAAACGG 118439 |||| ||||| || || || | || | || ||| |||| | | | | | ||||| | Sbjct 125593 CAAATTTAAAATCATCCATTTCCTTCACAT--TTGGATTTAGGTACAATTTTGGAAAGTG 125536 Query 118440 GAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGC 118499 || | || | ||| | ||||| ||| ||||| |||||| |||||||||| Sbjct 125535 TTTGGGATTTCTCTCTAATTGTACTTTCAATGGTTCAATATGATTCGAATAGACATGACA 125476 Query 118500 ATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTA 118559 ||| ||| ||||| || ||||| ||| | | || | || || ||||| | Sbjct 125475 ATCACCACAACAATGTACAAAATCACCTGGTTTCAATCCACATACTTGTGCCATCATACA 125416 Query 118560 TGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCT 118619 ||||| ||| ||| || | ||||||||| || || | |||||| || |||||| Sbjct 125415 AGTCAATAAAGCATAGGATGCAATATTAAAAGGTACTCCTAAACCCATATCACATGATCT 125356 Query 118620 CTGGTACAATTGGCAA 118635 || |||| ||| ||| Sbjct 125355 TTGATACATTTGACAA 125340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414473900475736