Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq42 107 1e-18 seq26 98.7 7e-16 seq38 89.7 4e-13 seq82 86.0 4e-12 seq120 84.2 2e-11 >seq42 Length=292872 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| || || || || || ||||| || ||| || | || |||||| | Sbjct 165481 AAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCC 165540 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | |||| ||| | || || ||| || || ||||| ||||| |||| | Sbjct 165541 AACGACACGATTGAGAAC--GTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTG 165598 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| || ||||||||||| |||| | | | ||||||||| | Sbjct 165599 ATCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACT 165658 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || |||| | || ||||| ||| | ||| | || || Sbjct 165659 ACAACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| || |||||| | || |||||| || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| ||||| ||| || || || ||||| |||| || Sbjct 166227 TGATACCATCGAGAAT--GTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGAC 166284 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | || ||||| || || || |||||||| || | | | | | | ||||||||| Sbjct 166285 CAACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTAC 166344 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||| ||| | || | |||||| | ||| | || || Sbjct 166345 AACATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 86.0 bits (94), Expect = 4e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || || ||| | | || ||||||||||| ||||| || Sbjct 165805 GACAAGGAAGGAATTCCACCAGACCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAA 165864 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | | |||||| ||||||||||| |||||||| || ||||| ||||||||| Sbjct 165865 GACGGAAGAACCTTGTCTGATTACAACATTCAAAAAGAATCAACATTGCACTTGGTTTTG 165924 >seq26 Length=133099 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| ||||||||||| | ||||| || ||||| | || || || | Sbjct 73059 AACATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTCC 73118 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| ||| | || ||||| ||||||||||| || ||||| |||| | Sbjct 73119 AATGACTCGATCGAGAAC--GTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCCG 73176 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || ||||| || ||||||||||| || || | | | | |||||| |||| Sbjct 73177 ATCAACAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGATT 73236 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| | | || || || || ||||||||||| ||| | ||| | || || Sbjct 73237 ACAGCGTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGG 73288 >seq38 Length=237352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||| | || || ||||| ||||| || | | || ||| | ||||| || | Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| ||| | ||| || ||||| ||||| | || || ||||| |||| | Sbjct 109462 AATGACTCGATTGAGAAT--GTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTG 109405 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||| ||| ||||||||||| || || | | | | || || |||| Sbjct 109404 ATCAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATT 109345 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| | ||||| || ||| | || ||||| ||| | || ||||| || Sbjct 109344 ACAATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGG 109293 >seq82 Length=211372 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || || | || || || || || | || |||||| || Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| ||||| ||| || ||||| |||||| |||| || Sbjct 147873 CGACACCATCGAGAAT--GTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGAT 147816 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | || || ||||||||||| |||||||| || | | | |||||| || ||| Sbjct 147815 CAACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 147756 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| || || ||||| ||||| ||| | ||| | || || Sbjct 147755 AACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq120 Length=320511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||| | ||||||||||| | ||||| ||| ||| ||| | || || || || Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | ||| || || ||||| || || ||||| || |||| || Sbjct 60756 CGACTCGATTGAGAAT--GTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGAT 60699 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||||| || || ||||||||||| || | | | | | || |||||| Sbjct 60698 CAACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTAC 60639 Query 27967 AACATCCAAAAAGA 27980 ||| | |||||||| Sbjct 60638 AACTTGCAAAAAGA 60625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859910520098