Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq29 183 7e-41 seq42 163 7e-35 seq82 125 2e-23 seq76 111 4e-19 seq120 98.7 2e-15 >seq29 Length=427163 Score = 183 bits (202), Expect = 7e-41 Identities = 178/228 (78%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||||||||| |||||||| || ||||| ||||| || || | | ||| ||| Sbjct 48772 AGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTT 48713 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | ||||| || || ||||| || | |||||| ||||| |||| ||||||| Sbjct 48712 CCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCC 48653 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||||||||| ||||| ||||| | ||| || || |||||| Sbjct 48652 TTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTG 48593 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGGTT 211123 || ||||| || || | |||||| || || | ||||| || |||||| Sbjct 48592 ATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTGATGGTT 48545 Score = 159 bits (176), Expect = 8e-34 Identities = 168/220 (76%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || |||||||||||||| || || ||||||||||| ||||| | |||||| || || Sbjct 49264 TCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 49205 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || ||||| || | |||||||| || || |||| || ||||| Sbjct 49204 ATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTT 49145 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGT 211075 || || |||||| || ||||| ||||| ||||| ||| |||||| || | ||| Sbjct 49144 ATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGA---TTCAACTTCCAAAGT 49088 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| |||||||| || | ||| || || || | |||||| Sbjct 49087 GATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 49048 >seq42 Length=292872 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||||||||| ||||||||||| ||||| ||||| | ||||| |||||||||||| Sbjct 166376 ACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCCATCTTCC 166317 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | | ||||||||| ||||||| |||||||| || ||| Sbjct 166316 AATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGG 166257 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| || || || |||||||| ||| | ||| || || | || || ||||| Sbjct 166256 ATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAATGGTCTTG 166197 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || | ||| || ||||| | |||||| Sbjct 166196 CCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| |||||||| || ||||||||||| || || | | ||| ||||| Sbjct 165699 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCC 165640 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| || || || || || || | |||||||| ||||| |||| ||||||||| Sbjct 165639 GTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTT 165580 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| ||||||||| || || ||||| | ||| || ||||||||||| Sbjct 165579 GTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACTTCGAGAGTGAT 165520 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| || || | ||||| || Sbjct 165519 AGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | || | ||| | || || |||||||| ||||| ||||| | | ||| ||| Sbjct 165929 AGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTT 165870 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | ||||| || || ||||| || | ||||||||| || |||| ||||||| Sbjct 165869 CCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCC 165810 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| ||||||||| ||| |||||||| ||||| ||| | |||||||| ||||| Sbjct 165809 TTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTA 165750 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || | || || || || | ||||| Sbjct 165749 ATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || |||||||| | ||||| || ||||| ||||| || || | || || ||||| Sbjct 166155 TCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCC 166096 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| || || || || || || | |||||||| || || |||| |||||||| Sbjct 166095 GTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 166036 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| |||||||||||||||||||| | |||||| || | ||| || Sbjct 166035 ATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAAT 165976 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | ||||| Sbjct 165975 TGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 >seq82 Length=211372 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | || || || ||||| ||||| || || | | ||| || || Sbjct 147717 TCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 147776 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || || ||||| | | |||||| || ||||||| |||||||| Sbjct 147777 ATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 147836 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || |||||| || || || ||||||||||| | ||| ||||| | |||||| Sbjct 147837 GTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGAT 147896 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || | ||||| || || | |||||| Sbjct 147897 GGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq76 Length=223365 Score = 111 bits (122), Expect = 4e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| |||||||| || ||||| ||||| || || | | || || || Sbjct 84299 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTTCTGCC 84358 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| || || || || | | |||||| || ||||||| |||||||| Sbjct 84359 ATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 84418 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||| ||||||||| ||||| || ||||||||||| Sbjct 84419 GTCTTGGATCTTTGACTTCACATTCTCGATGGTGTC 84454 >seq120 Length=320511 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||||| || | || ||||| | ||| || || | || || ||||| Sbjct 60828 TCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAGAGAGTGTTCTTCC 60887 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||||||||| |||| | || ||||| |||| |||| ||||||||| Sbjct 60888 ATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTGGAATTCCTTCCTT 60947 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||| || ||||| || || || | |||| |||||||| | ||||| Sbjct 60948 ATCTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACTCAACCTCCAATGTGAT 61007 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || | || ||||| || || ||||| | ||||| || Sbjct 61008 AGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTT 61046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143475161510