Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq42 145 5e-30 seq82 127 1e-24 seq38 107 1e-18 seq120 105 5e-18 seq29 96.9 2e-15 seq151 93.3 3e-14 >seq42 Length=292872 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || || ||| | |||||||| |||| Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| || || |||||| | || ||||||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||| ||||||||| | | ||| | ||| |||||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || |||||||| || | ||| | || ||| |||||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGGA 166167 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| || |||||||| || || || |||||||||||||| || ||| Sbjct 165481 AAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCC 165540 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | ||| || || ||||| ||||| | || || ||| Sbjct 165541 AACGACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 165600 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||| || |||||| ||||||||| | | || || ||| ||| Sbjct 165601 CAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 165660 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || ||||| | || || || || || ||| |||| || Sbjct 165661 AACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||| | || ||||| || || ||||| || ||||| |||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| ||| || ||||| ||||| | || ||||| ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| || ||| | ||||||| | | || || ||||||||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || |||||||| || ||||| || || ||||| || Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAG 165926 Score = 89.7 bits (98), Expect = 3e-13 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| | || || || || || || | ||||| || |||| Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || |||| | | || || ||||| | || ||||| | Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGA-TCCAAGATAAGGAAGGCATTCCTCCAGACC 166285 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | || || || || || || ||| ||||||| | | | || | |||||||| Sbjct 166286 AACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACA 166345 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTTA 23848 |||| ||||||||||| || | || | ||||| || ||| | ||||| || || ||| Sbjct 166346 ACATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGGTTC--CAATTA 166403 Query 23849 AA 23850 || Sbjct 166404 AA 166405 >seq82 Length=211372 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| ||| | || || || || |||||| | || || || |||| Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | || ||||| |||||| | || ||||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGA-TTCAAGACAAGGAAGGTATTCCTCCAGATC 147815 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | || || |||||||| || ||| ||||||| | | || || || |||| Sbjct 147814 AACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACA 147755 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| ||||| || || ||||| || || || || || ||| ||||||| Sbjct 147754 ACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq38 Length=237352 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| | ||||||||||| || || || | ||| ||||| | || ||||| ||| Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| | |||| ||| || ||||| ||||| | || || ||||| | || | || Sbjct 109462 AATGACTCGATTGAGAATGTT-AAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGA 109404 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||||| || | ||| || |||||| | || || | | | |||||| ||||| Sbjct 109403 TCAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTA 109344 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||| || | || | || || || || || || || || || Sbjct 109343 CAATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGG 109293 >seq120 Length=320511 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| | || || |||||| | || |||||||| ||||| | ||||| || |||| Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| | |||| ||| | || | |||| ||||||| ||||| || | || | |||| Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAA-TTGCTGATAAAGAGGGAATTCCAGCCGATC 60698 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| | || ||||||||| |||| || | | | || | ||||||| Sbjct 60697 AACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACA 60638 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || | |||||||| || || | || | || || || | || |||||| Sbjct 60637 ACTTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGGA 60588 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| | || || ||||| ||||| || | ||| ||||| | || ||||| || Sbjct 61046 AACATGCAACTATTTGTCAAAACACTCACTGGTAGAACTATCACATTGGAGGTTGAGTCT 60987 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| | |||| ||| | || | |||| | | || || ||||| | || | || Sbjct 60986 AATGACTCGATTGAGAATGTGAAGAGCAAAA-TCACAGATAAGGAAGGAATTCCAGCTGA 60928 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||||||||| || | ||| ||||| ||| |||| || | | | || | || || Sbjct 60927 TCAACAGCGTTTGATCTATGCAGGCAAGCAATTGGAGGATGGAAGAACACTCTCTGACTA 60868 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| | ||||| || | || | ||||| || ||||| ||| |||| ||| Sbjct 60867 CAACGTTCAAAAGGATGCTACCCTTCATTTGGTCTTAAGATTGAGAGGTGGA 60816 >seq29 Length=427163 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | || ||||| || |||||| | |||||||| || | Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || ||| ||| || || || || | || |||||||| Sbjct 49108 CGACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCA 49167 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || || || ||| ||||||| | | || | ||||||||| Sbjct 49168 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAA 49227 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 49228 CATCCAAAAGGAATCAAC 49245 >seq151 Length=76492 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| | || || || || || || || | ||||||||| | || ||||| ||| Sbjct 50806 AACATGCAATTATTTGTCAAGACACTTACAGGTAGAACGATCACATTGGATGTTGAGTCC 50865 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| | |||| ||| ||||| || ||| | | || || |||||| | || | || Sbjct 50866 AATGACTCAATTGAGAATGTTAAA-CAGAAAGTCACAGATAAGGAAGGTATTCCAGCGGA 50924 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||||||||| || | ||| || || ||| |||| || | | | |||||| ||||| Sbjct 50925 TCAACAGCGTTTGATTTATGCTGGTAAGCAATTGGAGGATGGAAGAACTTTATCGGATTA 50984 Query 23787 CAACATACAAAAAGA 23801 || ||||||| || Sbjct 50985 TAATGTACAAAAGGA 50999 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| | ||||| || || | || ||||| || ||||| | |||| || |||| Sbjct 51037 ATGCAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGAGTCCAAT 51096 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| || | || | ||| | ||| ||| || |||||| | || | ||||| Sbjct 51097 GACTCGATTGAGAACGTGAAGAGAAAGATTTG-TGATAAGGAAGGTATTCCAGCGGATCA 51155 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| | || || |||||| |||| || | | | || | || || | Sbjct 51156 ACAACGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTATAG 51215 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | | |||||||| || || | ||| | ||||| || ||||||||||| Sbjct 51216 CTTGCAAAAAGATTCAACTATCCATCTTGTTTTGAGACTGCGAGGAGGA 51264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007235411592