Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq29 192 1e-43 seq42 176 1e-38 seq82 158 3e-33 seq76 147 5e-30 seq38 109 1e-18 seq151 102 2e-16 seq120 100 7e-16 >seq29 Length=427163 Score = 192 bits (212), Expect = 1e-43 Identities = 180/228 (79%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||||||||||||||||||||| ||||| | ||||| |||| ||| ||||| Sbjct 48772 AGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTT 48713 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| ||||| || || ||||| |||| |||||| || || ||||| |||||| Sbjct 48712 CCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCC 48653 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||||| ||||| ||||| || ||| || || | ||| Sbjct 48652 TTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTG 48593 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTATGGTT 225722 || |||||||| || ||||| || | ||| | |||||| || |||||| Sbjct 48592 ATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTGATGGTT 48545 Score = 167 bits (184), Expect = 6e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| |||||||| ||||| ||||| ||||||| |||||||||| | ||||| || Sbjct 49264 TCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 49205 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| |||||||| || | |||||||| || || ||||| || ||||| Sbjct 49204 ATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTT 49145 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| |||||| ||| || ||||| ||||| | ||| || || || ||||| Sbjct 49144 ATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAACTTCCAAAGTGAT 49085 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||||||||| | ||| | ||||||| Sbjct 49084 GGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 49048 >seq42 Length=292872 Score = 176 bits (194), Expect = 1e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| |||||||| ||||| || |||||||| | |||||||||| | ||||| || Sbjct 166383 TCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCC 166324 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| |||||||| || | || ||||||||| || ||||| |||||||| Sbjct 166323 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTT 166264 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| |||||||| || || ||| || || || || || Sbjct 166263 ATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAAT 166204 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| ||||||||||| | || | ||||||| Sbjct 166203 GGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| || | ||| | || ||||||||||| | |||||||| | ||| ||||| Sbjct 165929 AGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTT 165870 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||||| ||||| || || ||||| |||| ||||||||| || ||||| |||||| Sbjct 165869 CCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCC 165810 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||||||| || || ||| ||||| || || || || || | || Sbjct 165809 TTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTA 165750 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || ||||| ||||| | ||| | |||||| Sbjct 165749 ATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||||||||||||| ||||||| ||||| |||| ||| ||||| || Sbjct 165699 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCC 165640 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || ||||| || || | |||||||| || || ||||| |||||||| Sbjct 165639 GTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTT 165580 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||||| || || ||||| || ||| || || | ||||| Sbjct 165579 GTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACTTCGAGAGTGAT 165520 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | || || | ||| | |||||| || Sbjct 165519 AGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || |||||||| | |||||||| ||||| | ||||| |||| | |||||| || Sbjct 166155 TCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCC 166096 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || ||||| || || | |||||||| || || |||||||||||||| Sbjct 166095 GTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 166036 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| ||||| |||||| |||||||||||| || ||| || || || || || Sbjct 166035 ATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAAT 165976 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | |||||| Sbjct 165975 TGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 >seq82 Length=211372 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | || ||||| ||||| | ||||| || | ||| ||||| || Sbjct 147717 TCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 147776 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| || || ||||| | || |||||| || || |||||||||||||| Sbjct 147777 ATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 147836 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| |||||| ||| ||| ||||||||||| || ||| || || || ||||| Sbjct 147837 GTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGAT 147896 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || || | ||| | ||||||| Sbjct 147897 GGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq76 Length=223365 Score = 147 bits (162), Expect = 5e-30 Identities = 126/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||||||||||||| ||||| | ||||| || | ||| ||||| || Sbjct 84299 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTTCTGCC 84358 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | ||||| ||||| || || | || |||||| || || |||||||||||||| Sbjct 84359 ATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 84418 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 ||||||||||||| ||||||| ||||||||||| Sbjct 84419 GTCTTGGATCTTTGACTTCACATTCTCGATGGTGTC 84454 >seq38 Length=237352 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||||| || | ||| ||||| | || ||||| ||||||||||| | ||||| Sbjct 109298 ACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGATAAAGT 109357 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| |||| || || ||||| | || | |||||||| || | ||||| || Sbjct 109358 TCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGAATGCC 109417 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||| ||| || || || ||| || || | ||| || || || || || Sbjct 109418 TTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACATCCAA 109477 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||| || | || || | ||||| | ||| | ||||||||| || Sbjct 109478 TGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTTGTG 109525 >seq151 Length=76492 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||||| ||||| |||| ||| || |||||||| | | || || | | ||| Sbjct 51257 CGCAGTCTCAAAACAAGATGGATAGTTGAATCTTTTTGCAAGCTATAGTCAGAAACTGTT 51198 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || | || || |||||| | || | |||||||| || | ||||||||| Sbjct 51197 CTTCCATCCTCCAATTGTTTTCCAGCGTAAATTAAACGTTGTTGATCCGCTGGAATACCT 51138 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || |||||| |||||| || || | ||| || || | || | | Sbjct 51137 TCCTTATCACAAATCTTTCTCTTCACGTTCTCAATCGAGTCATTGGACTCTGCTTCAATC 51078 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||||||| || | ||| | |||||| Sbjct 51077 GTGATGGTCTTTCCTGTCAAAGTCTTGACGAATAATTGCAT 51037 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| | || ||||| ||||| ||||| | |||||||| ||||| || | || Sbjct 51012 GTGAAGAGTTGCATCCTTTTGTACATTATAATCCGATAAAGTTCTTCCATCCTCCAATTG 50953 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| | || | || ||||| || | |||||||||||||| ||| || || Sbjct 50952 CTTACCAGCATAAATCAAACGCTGTTGATCCGCTGGAATACCTTCCTTATCTGTGACTTT 50893 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| || || | ||| || || || || || |||||||| | || || Sbjct 50892 CTGTTTAACATTCTCAATTGAGTCATTGGACTCAACATCCAATGTGATCGTTCTACCTGT 50833 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | || || | || | |||||| || Sbjct 50832 AAGTGTCTTGACAAATAATTGCATGTT 50806 >seq120 Length=320511 Score = 100 bits (110), Expect = 7e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| |||||||| | || || |||||||| | |||||||| | | || Sbjct 60594 ACGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAGAGATTGT 60653 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || | || || |||||| | || | |||||||| |||| ||||| || Sbjct 60654 TCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTGGAATTCC 60713 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || || || ||||||| || || | ||| || || || || || Sbjct 60714 CTCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCGTTGGACTCTACTTCCAA 60773 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || || ||||| | |||| ||||||| Sbjct 60774 TGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCATT 60816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192522429678356