Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq93 149 5e-31 >seq93 Length=103736 Score = 149 bits (164), Expect = 5e-31 Identities = 372/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | ||| ||||| || || || ||||| |||| ||||| ||| || || | Sbjct 84859 ACAAGAGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGA 84918 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | || ||||| ||||| ||||||||||| || | |||||| || | || || ||| Sbjct 84919 AGGTCAATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCAC 84978 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT 4719 |||||| || ||||| || ||||| || | ||||| | ||| || | | Sbjct 84979 TAAAGAAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTTATCCG 85038 Query 4720 TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 | || |||||||| || ||||| ||| || || | |||| | |||| || | | Sbjct 85039 AG---TTGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAA 85095 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 | || || || | | | |||| | ||| | ||| || || || ||||| Sbjct 85096 TGGCATTGAAGAGACGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTG 85155 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 |||||| || | ||| ||||| || || ||||| || ||||| || || ||||| |||| Sbjct 85156 AATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTT 85215 Query 4900 CTGTTACTTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 | | | ||||||||| | | ||| | || || ||||| || || || ||||| || Sbjct 85216 CAGGAATTTGAACTTCAGCCATAAATTGTTGACAC-AAGTTCTCATTCACAATACCATCG 85274 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018 ||| ||||| || ||||||||| || |||| ||||| | | || || || Sbjct 85275 GAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTT 85334 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||| || | | |||| | | ||| ||||||||| ||||||| || || || Sbjct 85335 TCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATG 85394 Query 5079 GCTTTTTTGTACATAGACCAAA 5100 || || |||||||| ||||| Sbjct 85395 GCCTTCTTGTACATCTCCCAAA 85416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046612521142