Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq36 273 3e-68 seq93 165 1e-35 >seq36 Length=122865 Score = 273 bits (302), Expect = 3e-68 Identities = 1148/1791 (64%), Gaps = 80/1791 (4%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||| ||| | | ||| ||||| ||||| || | ||| |||||| | || || Sbjct 114525 GCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTACTCCAAGCATAAAAG 114584 Query 76863 TGCATGCTTGTCAGTTTGGA-ATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 |||||| | || |||||| || | ||| ||| ||| | ||| | || ||| Sbjct 114585 TGCATGGAAGACATTTTGGAGATGGAT-GGAGTGGCAATAAAGACATTGAGTGATTGAGA 114643 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 |||||| ||||| | |||| ||| || | | | | ||||||| ||||| Sbjct 114644 TTGATCAATGAATGGAGCTCTCTCAATGGCAAGATCCAACAAACTCTTTTGTTTGATTTC 114703 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGA 77038 ||||| ||| ||| | | || || ||||||||||||| | | |||||||| || Sbjct 114704 CCAAACAGTCTTGTACAATTCCTTAATATCATCTGGAATTCCAGCAATGTTTTGAATAGA 114763 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 ||| | | | |||||| |||| |||| |||||||| || || | | | Sbjct 114764 ACCTCTGTTGGCAATAATTTGATTCACAATATTTGAATTCCACA-TTCCCAAACGAATCA 114822 Query 77099 A-----ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 | | |||| ||| |||| | | || |||| ||| ||| || | | Sbjct 114823 AGTCAGATACTAA----ATGTCTGTTAATGACTGGATATTCACCACTCAAGACACGTCTC 114878 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 || || | ||| || ||||| || | | ||||||| || |||||||||||| || Sbjct 114879 GTATACACATTCGAAGTGTATGGCTCAAAACATTCATTATTACCCAAAATTTGACTGGTG 114938 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273 || ||||||||||| || || || | ||||||||| | | |||| | | |||| Sbjct 114939 GATGCAGTTGGCATTGGAGCAACAAGTAAACTATTACGAACTCCATATTTGAGAATTTCT 114998 Query 77274 TCTTTTAGATATTTCCAATCCCA-------------AAGATCTG--------AAGGTACA 77312 | | | | | || ||||||||| | ||||| ||||| || Sbjct 114999 TGTCTCAAACCTTCCCAATCCCATCTTCCACTCGTGATGATCTTTCCTTCAAAAGGTTCA 115058 Query 77313 ACATCC------CAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA--TCCATTAT 77364 | | | |||| || | ||| | |||||| |||| ||| || ||| | || Sbjct 115059 CCTTTCATGGTCCAAAATTCATGTTGGAAAATTCCTCTACT--CATTGGACTTCCTTGAT 115116 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 | || ||||||||||||||||| | || | ||||||||| ||| |||||| | ||| Sbjct 115117 AGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGCAGCAAAAT 115176 Query 77425 AAATTGTTTCGAAAATCTTCTT-ATTGAGA-TCTTGTGCTTCAATACTATCAAACGGATA 77482 | |||||||||||||| |||| ||| | | ||||| ||||| ||| || || ||| Sbjct 115177 ATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCGAAGGGAAG 115234 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 ||| | ||||||||||| || ||||||||||| || | |||||| || | |||||| Sbjct 115235 ATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCT 115294 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 | |||| || ||||||| || ||||||||||| |||| || || || || | Sbjct 115295 CATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAA 115354 Query 77603 ATTTCTAACAACTACTTTAACCACGTC---CTTTAGTTTAAGAAAAT-----CAAATCTT 77654 ||| | | | ||| || | || | | ||| | || | | || | Sbjct 115355 ATTCTTGGTGGCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGT 115414 Query 77655 CCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-T 77713 | || | ||| || | | || ||| ||| | ||||| || ||||| |||| | Sbjct 115415 C--TCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCT 115472 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | | | | |||| || || || ||||| | || ||||||| || || ||||| Sbjct 115473 GGAGCT-GTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATT 115531 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 |||||| || ||| |||| |||| ||||||||||| || | ||| || || || Sbjct 115532 TTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTC 115591 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATA-GATTTGTATC 77892 ||| |||| || ||||| | ||| | || ||| | | | | || | | Sbjct 115592 AATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGTGCA-C 115650 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 | | ||| | ||||| | ||| | | ||| || || ||||| |||||| | | Sbjct 115651 GACCCTCCTTCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAA 115710 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 |||||| |||||| || || | | |||||| | | ||| ||||| |||| | || Sbjct 115711 GTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCA 115770 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 |||| | |||| | ||| | | | | ||| | |||||| | || | ||| || |||| Sbjct 115771 TAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTC 115830 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | ||||||||| | | ||| | ||| || | |||||| |||||||| || || | ||| | Sbjct 115831 CAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAA 115890 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 || | |||| ||||||| ||| || ||||| | || | ||| |||| || Sbjct 115891 CGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGA 115950 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 | || | | ||| ||||| | || || || ||||| || ||||| ||| || || Sbjct 115951 ATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATC 116010 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 || || ||||| ||| || ||| | || || || || || |||| ||||| | | Sbjct 116011 CAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGG 116070 Query 78313 CGCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG----TTAAG 78367 | | |||| || | ||||||||| ||||| || || || ||||| |||| Sbjct 116071 CAC-ACGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAG 116129 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 ||| || | || ||||||| || ||| || ||||| || | || ||||| || Sbjct 116130 AAG-CAAGAACT---CATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGC 116185 Query 78428 ATGCGTAAACCATTTTTCAG---AAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484 || | ||| | ||| ||||| | ||| ||||||||||| || || || Sbjct 116186 GTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCAATATC 116242 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 | |||||| || | |||||||| ||||| || ||||||| ||| Sbjct 116243 GGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTC 116293 >seq93 Length=103736 Score = 165 bits (182), Expect = 1e-35 Identities = 395/593 (67%), Gaps = 6/593 (1%) Strand=Plus/Plus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 |||||||||| | ||| ||||| || || || || | || ||||| | || | || Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || | |||||| || | |||||||||| |||||| || ||||| || ||||| Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 48282 GCGGTAAGTCTCTCTCCGTAACTGGCT-TCGTTGTGTATCCACCGTTGTGCCCAATCAGC 48340 || | | || || | ||| | | || || ||||| |||||| ||| Sbjct 85008 GCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCCAACGAGC 85066 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT 48400 |||||| | || | || | || || || ||||| |||||| | | |||| | | Sbjct 85067 CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGT 85126 Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 || |||| ||| || || |||| | |||||| || | |||||||| ||||| || Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || || ||||| || |||||||| ||||| | || || || || | |||| ||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTG 85246 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | ||| |||||||| || || ||||| |||||||| || || || ||| || || Sbjct 85247 ACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGAT 85306 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 || | || ||| |||| | | || | | ||| | | |||||| | | ||| || Sbjct 85307 GAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGGAGATCCAC 85366 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTA 48700 ||||||||| ||||| || |||||| || || || ||||| | ||| | | | Sbjct 85367 TTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACCTTTTGATG 85426 Query 48701 TTGGATTGGGAAAATAACAAATCTATTTGGATTTT--TTGCAAGGATAGGTTC 48751 || ||||||||| | ||| || | || |||||||| ||| |||| |||||| Sbjct 85427 TTCGATTGGGAAGAGAACGAAACGATGTGGATTTTCCTTG--AGGACAGGTTC 85477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663815751360