Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq36 232 1e-55 seq93 196 7e-45 >seq36 Length=122865 Score = 232 bits (256), Expect = 1e-55 Identities = 1200/1892 (63%), Gaps = 78/1892 (4%) Strand=Plus/Plus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| ||||||| | || ||||||| ||| | | ||| ||||| ||||| || | Sbjct 114504 GTGAATTGAATGGCATCGGCAGCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTCAAT 114563 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGA-ATAACTCGGATCGGCTAT 75495 ||| |||||| | || || |||||| | | |||||| || | ||| ||| || Sbjct 114564 CCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTTGGAGATGGAT-GGAGTGGCAAT 114622 Query 75496 ATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTAT 75555 | | ||| | || ||| |||||| ||||| | |||| ||| || | | | Sbjct 114623 AAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCTCTCTCAATGGCAAGATCCAA 114682 Query 75556 AATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 75615 | ||||||| |||||||||| ||| ||| | | || || ||||||||||||| Sbjct 114683 CAAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATCTGGAAT 114742 Query 75616 ATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATT 75672 | | |||||||| || || | | | |||||| |||| || | ||| Sbjct 114743 TCCAGCAATGTTTTGAATAGAACCTCTGTTGGCAATAATTTGATTCACAATATTTGAATT 114802 Query 75673 CCACAATTTTCTCTCGGTTAAA-----ACTCTAAGGAGATGAGGATTAACAATTTGAAAT 75727 ||||| || | || | || | |||| ||| |||| | | || || Sbjct 114803 CCACA-TTCCCAAACGAATCAAGTCAGATACTAA----ATGTCTGTTAATGACTGGATAT 114857 Query 75728 TCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTG 75787 || ||| ||| || | || || || | ||| || ||||| || | | ||||||| Sbjct 114858 TCACCACTCAAGACACGTCTCGTATACACATTCGAAGTGTATGGCTCAAAACATTCATTA 114917 Query 75788 TTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTG 75847 || |||||||||||| || || ||||| ||||| || || || | ||||||||| | Sbjct 114918 TTACCCAAAATTTGACTGGTGGATGCAGTTGGCATTGGAGCAACAAGTAAACTATTACGA 114977 Query 75848 AGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA-------------AAG 75894 | |||| | | |||| | | | | | || ||||||||| | | Sbjct 114978 ACTCCATATTTGAGAATTTCTTGTCTCAAACCTTCCCAATCCCATCTTCCACTCGTGATG 115037 Query 75895 ATCTG--------ATGGTACAACATCC------CAGAGATCGTATTGTAGAATTCCGTTG 75940 |||| | ||| || | | | || | || | ||| | |||||| | Sbjct 115038 ATCTTTCCTTCAAAAGGTTCACCTTTCATGGTCCAAAATTCATGTTGGAAAATTCCTCTA 115097 Query 75941 CTAGCATATGA--TCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 || ||| || ||| | ||| || || |||| || || | | || | ||| |||| Sbjct 115098 CT--CATTGGACTTCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAAC 115155 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTT-ATT-AAGATCTTGCGC 76056 | || || ||| | |||| |||||||||||||| |||| ||| || |||||| || Sbjct 115156 TGGCTGTCAATGCAGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GC 115213 Query 76057 TTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCC 76116 ||| ||| || || ||| ||| | ||||| ||||| || | ||||||||| || Sbjct 115214 TTCTTCACTCTCGAAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACC 115273 Query 76117 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATT 76176 | |||||| || | ||||||| |||| || |||||| || || |||||||| Sbjct 115274 CAAACCAATGGGACGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATT 115333 Query 76177 AATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAG 76236 | || || || || || | ||| || | | ||| || | || | || Sbjct 115334 CTTGTCAATGATCTTGTTCAAATTCTTGGTGGCAATTTTGACAATTTCAAACAATTGTTC 115393 Query 76237 AAAATCAAATTTTCCA-TC-TATCACAAACATATT----AAGAGCTATAGATGCTAGATT 76290 | ||| | | | || | ||| ||||| | ||| || ||| ||| | || Sbjct 115394 ATGATCGTAGGTACGTGTCGTCTCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTT 115453 Query 76291 ACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACA 76350 ||| || ||||| |||| | | | |||| || || || || || | || | Sbjct 115454 ACACACAGCTACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGA 115513 Query 76351 CTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAAC 76410 ||||| ||||||||||||||||| || ||| | ||||||| ||||||||||| | Sbjct 115514 TTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCAT 115573 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 | ||| ||||| ||||| |||| || ||||| | ||| | || ||| Sbjct 115574 GTAAGGAACACCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACG 115633 Query 76471 TATTATA-GATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCAT 76529 | | | | || | || ||| | ||||| | ||| || | ||| || | Sbjct 115634 AACGACACGGCGTGCA-CGACCCTCCTTCTCATAACGCAAATACAATTCATTAAACTCTT 115692 Query 76530 CTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCAT 76589 | ||||| |||||| | | |||||| |||||| ||||| | | |||||| | | || Sbjct 115693 CACCCCACACATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAAT 115752 Query 76590 CTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 76649 | ||||| || | | |||||| | |||| | ||| | | | | ||| | |||||| | Sbjct 115753 CCTCCTTCACTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAG 115812 Query 76650 TTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAAT 76709 || | ||| || ||||| ||||||||| | | ||||| || || | |||||| |||| Sbjct 115813 CTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAAT 115872 Query 76710 GCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATAT 76769 |||| || || | ||| | || | | || ||||||| ||| || ||||| | | Sbjct 115873 GCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGT 115932 Query 76770 ATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTG 76829 | | |||||||| || | || | | ||| ||||| | || || || || || || | Sbjct 115933 AACGGGCAGTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGG 115992 Query 76830 TTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTG 76889 |||| ||| || |||| | |||||||| ||| || || | ||| || || || | Sbjct 115993 TTCCTCGAATGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAG 116052 Query 76890 CCATTTTAGAGATTAGAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 | | || || || | ||||| ||| || | ||| || || || || || ||| Sbjct 116053 CACTCTTGGATATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCG 116111 Query 76949 TCCATCATGT----TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 || ||||| ||||||| || | || ||||||| || ||| || ||||| Sbjct 116112 TCTTTCATGGCCACTAAGAAGCAAGAA-CT---CATTTGAGGAGTGGGAGTACCAGCATT 116167 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA---AAGTAGATTGTATGTTTC 77061 || | |||||||| || || ||||| | ||| ||||| | ||| ||||| Sbjct 116168 GAAGAGAGTAGGAGAGGCGTGGATGAACA---TACCAGTGCTAAGTAATTCGTAGGTTTC 116224 Query 77062 AATAACTGCTTCT--ATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 |||| | ||||| ||||| | |||||| || | | |||||||| ||||| || Sbjct 116225 AATAGC--CTTCTCAATATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGT 116282 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 ||||||||||| || | || | ||| | |||||| | |||| | ||| ||| Sbjct 116283 TGAGGTCGTTCGGCAATAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTA 116342 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTC 77211 || ||||| || | | || | | |||| ||| Sbjct 116343 AAGCCAAAGTAATCGAATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 196 bits (216), Expect = 7e-45 Identities = 390/575 (68%), Gaps = 2/575 (0%) Strand=Plus/Plus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 |||||||||| | ||| ||||| || || || || | |||||||| | || | ||| Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 || | |||||| || | |||||||||| |||||| || ||||| ||| || || Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 || | | || || | | | ||| | ||||| | ||||||| |||| Sbjct 85008 GCAATCAATCGTTCAGCAAACAAGTTATCCGAGTTGATCCATTTCAAAGCCCAACGAGCC 85067 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCAC-T 46889 || || | || | || | || || || ||||| |||||| | | |||| || | | Sbjct 85068 TTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTC-TCTCGT 85126 Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 || |||| || || || |||| | |||||| |||| |||||| || ||||| || Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || ||||| || |||||||| ||||||| ||| || || || | |||| ||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTG 85246 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 | |||| ||||||||||| || ||||| |||||||| || ||||| ||| || || Sbjct 85247 ACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGAT 85306 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | || ||||| |||| | || | | ||| | | |||||| | | ||| || Sbjct 85307 GAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGGAGATCCAC 85366 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||||||||| |||||||| || ||| || || || ||||| | ||| | | ||| Sbjct 85367 TTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACCTTTTGATG 85426 Query 47190 TTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 || ||| || || | ||| || | || |||||||| Sbjct 85427 TTCGATTGGGAAGAGAACGAAACGATGTGGATTTT 85461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929284695680