Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq29 149 1e-30 seq42 116 9e-21 >seq29 Length=427163 Score = 149 bits (164), Expect = 1e-30 Identities = 172/228 (75%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||||||||||||| || ||||| || || ||||| |||||||| |||| || ||| Sbjct 48775 CTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTT 48716 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||||| ||||| ||||| ||||| || || || || || | | |||| Sbjct 48715 CTTCCATCTTCTAATTGCTTT--CCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTC 48658 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTC 152059 ||||||| ||||| || || ||| || |||| | |||| || | || ||||| Sbjct 48657 CTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGA--TTCGACTTC 48600 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||| ||||| ||||| || | |||||| ||||||| ||||| || Sbjct 48599 AAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTT 48552 Score = 104 bits (114), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || ||||| |||||||| || || ||||||||||||||||||| | ||||| || Sbjct 49264 TCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 49205 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | || || ||||| || | | || || || | | || || ||||| Sbjct 49204 ATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTT 49145 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||| ||| ||||| |||| | |||| | || ||||| | ||| || Sbjct 49144 ATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAACTTCCAAAGTGAT 49085 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCTA 152119 || || || || | ||| |||||||| | |||||| ||| |||| |||| Sbjct 49084 GGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATTCCACCTCTTAATCTA 49033 >seq42 Length=292872 Score = 116 bits (128), Expect = 9e-21 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| | ||||| |||||||||||||||||||| ||||||||||||| | || Sbjct 166389 CCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGT 166330 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| |||||||| | || || ||||| || | || || ||||| | | || || Sbjct 166329 TCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCC 166270 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCA 152060 |||||| ||||| || ||| |||||| |||| | | | || || | || ||||| Sbjct 166269 TTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGA--TTCGACTTCC 166212 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| || ||||| || | ||| || || |||| |||||| Sbjct 166211 AATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 107 bits (118), Expect = 4e-18 Identities = 161/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| | || | || | || || |||||||| ||||||||||| | || ||| Sbjct 165932 CTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTT 165873 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || || ||||||| ||||| ||||| ||||| || || || ||||| | | |||| Sbjct 165872 CTTCCGTCTTCTAATTGCTTT--CCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTC 165815 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTC 152059 ||||||| ||||| || ||| ||| || | || | | | || || | ||| || || Sbjct 165814 CTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGA--CTCAACCTC 165757 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || || || || | || || ||||||| ||||| Sbjct 165756 AAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || |||||||||||||| |||| || ||||| || ||||| | Sbjct 165690 CAAG-TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCCA 165632 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | | || || || | | ||||||||||| ||||| | Sbjct 165631 ATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGA 165572 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 | || ||| || |||| | |||| || | || ||||| ||||| ||||| || Sbjct 165571 TCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGA--TTCGACTTCGAGAGTGATAGTCTT 165514 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||||| ||||||| ||||| || Sbjct 165513 ACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812314369154