Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq82 163 6e-35 seq42 161 2e-34 seq29 159 7e-34 seq76 107 4e-18 seq151 102 2e-16 seq120 93.3 9e-14 seq38 89.7 1e-12 seq66 86.0 1e-11 >seq82 Length=211372 Score = 163 bits (180), Expect = 6e-35 Identities = 154/194 (79%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||| ||||||||||||| |||| || | |||||| || | ||| || ||||||| Sbjct 147741 TTCCTTTTGAATGTTGTAGTCAGACAAG-GTTCTGCCATCTTCCAATTGCTTTCCGGCAA 147799 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||| | |||||| || |||||||| ||||||||||| ||||||| || || Sbjct 147800 AGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTTGACTTGACAT 147859 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| ||||| | |||||| || | |||||| |||||||| ||||| ||||||| Sbjct 147860 TCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAA 147919 Query 283087 CGAATATCTGCATT 283100 |||| || |||||| Sbjct 147920 CGAAAATTTGCATT 147933 >seq42 Length=292872 Score = 161 bits (178), Expect = 2e-34 Identities = 157/197 (80%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||||||||||||||| | |||| || | || || || | |||||| || |||| Sbjct 165675 TTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTTCCGTCTTCCAATTGTTTACCAGCAA 165617 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACG 283025 | |||||||||||||| ||| ||||| || ||||||||||||||||| |||||| ||| Sbjct 165616 AAATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTT-GCTTTTCACG 165558 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | || || ||||| | |||||||||||||||||| |||||||| || | ||||| Sbjct 165557 TTCTCAATCGTGTCGTTGGATTCGACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTG 165498 Query 283086 ACGAATATCTGCATTTT 283102 ||||| || ||||| || Sbjct 165497 ACGAAGATTTGCATCTT 165481 Score = 136 bits (150), Expect = 8e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 282887 AAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATC 282946 ||| || || || || ||| ||| ||||| ||||||||||| | || || | || || Sbjct 166152 AAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTC 166093 Query 282947 CTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTC 283006 || | |||||| || ||||| |||||||||||||| || |||||||| ||||| || Sbjct 166092 TTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 166033 Query 283007 TTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 ||| ||| ||||| || ||| | ||||| ||||| | ||| ||||| | ||| || | Sbjct 166032 TTGAATC-TTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTG 165974 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| || | ||||| ||||| || ||||| Sbjct 165973 TCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 Score = 134 bits (148), Expect = 3e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||||||||| |||||||| |||| |||| || | || || |||| ||| || ||||||| Sbjct 165903 TTCTTTTTGAATGTTGTAATCAGACAAG-GTTCTTCCGTCTTCTAATTGCTTTCCGGCAA 165845 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||||||| ||||| || ||||||||||||||||||| ||| ||| Sbjct 165844 AGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGT 165785 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | || || || || | || || || ||||| || ||||| || ||||| || |||| Sbjct 165784 TTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAA 165725 Query 283087 CGAATATCTGCAT 283099 |||| || ||||| Sbjct 165724 CGAAGATTTGCAT 165712 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| |||||||| || | || || | ||||| || | ||| || || || || Sbjct 166358 TCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAA 166299 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||||||||| ||||| || ||||| ||||||||||||| || || | Sbjct 166298 ATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGACTTGACATTC 166239 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || | ||||||||| | || || ||||| || |||||||| ||||| Sbjct 166238 TCGATGGTATCATTGGATTCGACTTCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACA 166179 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 166178 AAGATTTGCATT 166167 >seq29 Length=427163 Score = 159 bits (176), Expect = 7e-34 Identities = 180/236 (76%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| | || | || || || || | ||| ||| ||||| ||||||||||| | Sbjct 48782 ACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGA 48723 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || | ||||| |||| ||| || ||||||||||| | | |||||| ||| | Sbjct 48722 CAAG-GTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTG 48664 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| || ||||||||||||||| |||||||| ||| | ||||| ||||| | |||| Sbjct 48663 GAATTCCTTCCTTGTCTTGGATC-TTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCG 48605 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 ||||| |||||||| ||||| || || |||||||| ||||| || ||||| || || Sbjct 48604 ACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTGAT 48549 Score = 154 bits (170), Expect = 3e-32 Identities = 150/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| || | ||| || | |||||| || | ||| || || || || Sbjct 49240 TTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAA 49181 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||||||||||| || ||||| |||||||| ||||| ||||||| || ||| | Sbjct 49180 AATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTT 49121 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || ||| ||||| | |||||| ||||| || |||||||| || || Sbjct 49120 CTCGATTGTGTCGTTAGATTCAACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCAC 49061 Query 283088 GAATATCTGCATT 283100 ||| || |||||| Sbjct 49060 GAAAATTTGCATT 49048 >seq76 Length=223365 Score = 107 bits (118), Expect = 4e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| ||||||||||||| | || | ||||||||| | ||| || || ||||| Sbjct 84323 TTCCTTTTGAATGTTGTAGTCAGACAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAA 84382 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | |||||| || |||||||| ||||||||||||||||||| || || | Sbjct 84383 AATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGACTTCACATT 84442 Query 283028 ATCGATAGTGTC 283039 ||||| ||||| Sbjct 84443 CTCGATGGTGTC 84454 >seq151 Length=76492 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| | | | ||||||| || || | |||||||| | |||||| || || | Sbjct 51227 TCTTTTTGCAAGCTATAGTCAGAAACTGTTCTTCCATCCTCCAATTGTTTTCCAGCGTAA 51168 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || ||||||||||| || | |||||||| ||||| || |||||| || ||| | Sbjct 51167 ATTAAACGTTGTTGATCCGCTGGAATACCTTCCTTATCACAAATCTTTCTCTTCACGTTC 51108 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || | ||| | || |||| | ||||| ||||| || ||||||||||| ||| Sbjct 51107 TCAATCGAGTCATTGGACTCTGCTTCAATCGTGATGGTCTTTCCTGTCAAAGTCTTGACG 51048 Query 283089 AATATCTGCAT 283099 |||| ||||| Sbjct 51047 AATAATTGCAT 51037 >seq120 Length=320511 Score = 93.3 bits (102), Expect = 9e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| | ||||||||||| || || | |||||||| | ||| || || ||| || Sbjct 60853 TCCTTTTGAACGTTGTAGTCAGAGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAG 60912 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGT 283027 |||||||| ||||| ||| | ||||| || ||||| ||| ||| |||||| || || | Sbjct 60913 ATCAAACGCTGTTGATCAGCTGGAATTCCTTCCTTATCTGTGAT-TTTGCTCTTCACATT 60971 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | ||| || || || || | ||||| || |||| || | || || || Sbjct 60972 CTCAATCGAGTCATTAGACTCAACCTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGAC 61031 Query 283088 GAATATCTGCATTTT 283102 |||| ||||| || Sbjct 61032 AAATAGTTGCATGTT 61046 >seq38 Length=237352 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| | ||||| || | | || | |||||||||| |||||| || ||| | Sbjct 109329 TCCTTTTGTACATTGTAATCCGATAAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAA 109388 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||||||||| ||| | ||||| || ||||| ||| ||| || ||| || | Sbjct 109389 ATCAAACGTTGTTGATCAGCTGGAATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTC 109448 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || | ||| | || || || | ||||| || |||| || | || |||||| Sbjct 109449 TCAATCGAGTCATTGGACTCAACATCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACG 109508 Query 283089 AATATCTGCATTTT 283102 |||| |||||||| Sbjct 109509 AATAATTGCATTTT 109522 >seq66 Length=52705 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/185 (71%), Gaps = 9/185 (5%) Strand=Plus/Minus Query 282921 TTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 ||||| |||| || | | |||||||||| |||||| || ||| |||| ||||||||| Sbjct 270 TTGTAATCAGAAACACTTCTTCCATCCTCTAATTGTTTTCCAGCATAGATTAAACGTTGT 211 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 || || | ||||||||||| |||||| ||||| |||||| | || | ||| Sbjct 210 TGATCTGCTGGAATACCCTCTTTGTCTGCAATCTTGCGCTTTACGTTGTC-----TATCC 156 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||| | || | | ||| || | || || | |||||| || |||| |||||| Sbjct 155 --AG--TCGTCATCCAATGCGATGGTTCTTCCAGTGAGAGTCTTGACAAATAGTTGCATT 100 Query 283101 TTCAT 283105 ||||| Sbjct 99 TTCAT 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731501887396