Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq93 187 3e-42 seq40 122 9e-23 >seq93 Length=103736 Score = 187 bits (206), Expect = 3e-42 Identities = 402/597 (67%), Gaps = 13/597 (2%) Strand=Plus/Plus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| | ||| ||||| || |||| |||||||| | | |||||||||||| || | Sbjct 84859 ACAAGAGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGA 84918 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGG 23620 | || ||||| ||||| || |||| || || |||||||| || | | || ||||| Sbjct 84919 AGGTCAATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCAC 84978 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680 |||||| ||||| || ||| |||||||| | | ||| | |||| || | Sbjct 84979 TAAAGAAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAA-----CAAGTT 85033 Query 23681 AATCAGAA---ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 | || || |||||||| | |||| ||||||| || || | || || | Sbjct 85034 A-TCCGAGTTGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTAT 85092 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTA 23797 |||| || || |||||| | | ||||| | || | || || || |||||||| Sbjct 85093 CAATGGCATTGAAGAGACGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTAGAG 85152 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG 23857 |||||| || | ||||||||| ||||| ||||| || || ||||| |||||||| | Sbjct 85153 TTGAATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGG 85212 Query 23858 CTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCAT 23917 |||||| | |||||| ||| | |||| || | || || || || |||||||||| Sbjct 85213 CTTCAGGAATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACCAT 85272 Query 23918 CACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG--TTGATAA 23975 | ||||||||||| || | |||| || || || ||| ||||| | |||| | Sbjct 85273 CGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGA- 85331 Query 23976 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 ||| ||| | | ||||||| | | ||| ||||| ||| | ||||| ||| ||| Sbjct 85332 -GTTTCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGC 85390 Query 24036 CAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 || ||| ||| ||||| ||||| | | ||||| ||||| || | ||||| Sbjct 85391 CATGGCCTTCTTGTACATCTCCCAAACCTTTTGATGTTCGATTGGGAAGAGAACGAA 85447 >seq40 Length=471424 Score = 122 bits (134), Expect = 9e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 64426 TGATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAA 64485 |||||| ||||||||||||||||| ||||| ||| ||||| ||||||| |||| |||| Sbjct 411270 TGATGTCATTGGAATTGATGAAGGTCAATTCTTTCCTGATTTAGTTGACTTTTGTGAAGC 411329 Query 64486 TATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGA 64545 || ||| ||| |||||||| ||||| || || |||| || | ||||| | Sbjct 411330 AGCTGCAAATGGAGGTAAAATTGTGATTGTGAGCGCCTTGGATGGAACTTTCCAAAGAAA 411389 Query 64546 ACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGC 64605 ||| |||||| | || | | | ||||| | ||||||| || | ||||| || || Sbjct 411390 ACCTTTTGGTGACGTCTTGCGTTTGATTCCAATGGCTGAAAGTGTTGTGAAATTGAAGGC 411449 Query 64606 TATATGTAAAATATGTTTCAAAGATGCTGCATTTACTAAA 64645 | | || | | || | |||||||||||| ||||||||| Sbjct 411450 TGTTTGCATGGTTTGCTGCAAAGATGCTGCTTTTACTAAA 411489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484258323600