Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq42 156 3e-33 seq82 136 3e-27 seq29 114 9e-21 seq120 102 6e-17 seq151 96.9 2e-15 >seq42 Length=292872 Score = 156 bits (172), Expect = 3e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| ||| | || ||||| | ||| |||||||| |||||||| Sbjct 166173 TTGCATTCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTA 166114 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| | |||| |||| || || || ||||| |||||||| || ||||| Sbjct 166113 GTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATC 166054 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || ||||| ||||| || | ||||||||| ||| Sbjct 166053 TGGTGGAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGA 165994 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 165993 TTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 Score = 136 bits (150), Expect = 3e-27 Identities = 175/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| |||| ||| || ||| ||||||||||||||||| Sbjct 165717 TTGCATACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTA 165658 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | | |||| |||| || || || ||||| |||||||| || |||| Sbjct 165657 GTCGGACAAGGTTCTTC-CGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGAT 165599 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | |||||||| || ||||| |||| |||| | || |||||| | Sbjct 165598 CAGGTGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCAC-GTTCTCAATCGTGTCGTTG 165540 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | || || ||||| || ||||||||||| |||||||||||||| Sbjct 165539 GATTCGACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 111 bits (122), Expect = 1e-19 Identities = 176/249 (71%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 44096 GATT-TTTATTTCATT----CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCT 44150 |||| ||||||| ||| || || |||| |||||| || |||||||| || ||| | Sbjct 166414 GATTGTTTATTTAATTGGAACCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTT 166355 Query 44151 TTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGAT 44208 |||| ||||||||||||| ||| || || | || |||| ||||| || || || || Sbjct 166354 TTTGAATGTTGTAATCGGAGAG--GGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAAT 166297 Query 44209 CAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCC 44268 ||| | || || |||| ||| | |||||||| || ||||| ||| | | | Sbjct 166296 CAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTC 166237 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||||| || |||||| || |||| ||||| ||||| || || | || || || || Sbjct 166236 GATGGTATCATTGGATTCGACTTCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAA 166177 Query 44329 GATTTGCAT 44337 ||||||||| Sbjct 166176 GATTTGCAT 166168 Score = 105 bits (116), Expect = 5e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| |||||||| |||| ||| | || || ||||| |||||||| Sbjct 165945 TTGCATACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTA 165886 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | | || | | |||| || | ||||| ||||||||||| | | || || | Sbjct 165885 ATCAGACAAGGTTCTTC-CGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGT 165827 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | |||||||| || ||||| || || || ||| | ||||| || | Sbjct 165826 CTGGTGGAATTCCTTCCTTGTCTTGGATCTT-TGATTTAACGTTTTCAATGGTATCATTG 165768 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| | ||||| |||||||| || | ||| || |||||||||||||| Sbjct 165767 GACTCAACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 >seq82 Length=211372 Score = 136 bits (150), Expect = 3e-27 Identities = 175/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||||| |||||| |||| ||| | || |||||||| |||||||| || | | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || | || |||| ||||| |||||||||||||| | || ||||||| ||| Sbjct 147766 AAGGTTCTGC-CATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||||||| || ||||| ||| | | | ||||||||| |||||| || Sbjct 147825 AATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGAC 147884 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATG 44347 ||||| || || ||||| || || | |||||| ||||| |||||||| |||||||| Sbjct 147885 CTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT--TGTGAATG 147940 >seq29 Length=427163 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| | ||||| || |||||||| || |||||||||||||||||||||| Sbjct 49275 CCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAA 49216 Query 44171 AGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || || || | || |||| ||||| || || || |||||||| || ||||||| | Sbjct 49215 AG--GGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 49158 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | || ||||| || ||||| || | | |||| | || |||||| ||||| Sbjct 49157 GAATCCCCTCCTTATCTTGAATCTT-TGACTTGACGTTCTCGATTGTGTCGTTAGATTCA 49099 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || |||||||| || | || |||||||| |||||||| Sbjct 49098 ACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Score = 98.7 bits (108), Expect = 7e-16 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | || ||||| || ||| |||||||| |||||||| Sbjct 48788 TTGCATACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTA 48729 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | | | || || | ||||| ||||||||||| | | || |||| Sbjct 48728 GTCGGACAAGGTTCTTC-CATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGAT 48670 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | |||||||| || ||||| |||| |||| | || |||||| | Sbjct 48669 CAGGTGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCAC-GTTCTCGATTGTGTCGTTG 48611 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| || || | || || ||||| || || | ||||| ||||||||||||||| || Sbjct 48610 GATTCGACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTG 48551 >seq120 Length=320511 Score = 102 bits (112), Expect = 6e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 44103 ATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 ||| |||||| ||||||| ||| || |||| ||||| || |||||||| | ||||| Sbjct 60809 ATTGCATTCCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGT 60868 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | || | |||| | | || |||| ||||| || ||| ||||||||||||| |||| Sbjct 60869 AGTCAGAGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGAT 60928 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 | | || | |||||||| || || || || ||||| | | || | ||| | Sbjct 60929 CAGCTGGAATTCCTTCCTTATCTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAG 60988 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||| || || || | || ||||| || || || || | ||||||| Sbjct 60989 ACTCAACCTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATG 61044 >seq151 Length=76492 Score = 96.9 bits (106), Expect = 2e-15 Identities = 170/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 44103 ATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 ||| ||| || ||||| | |||||||| || |||||| || |||||||| | || | Sbjct 51043 ATTGCATACCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTAT 50984 Query 44163 AATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||| | | ||| | | || |||| ||||| || ||| | ||||||||||| || Sbjct 50983 AATCCGATAAAGTT--CTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTG 50926 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 ||| | || | ||||||||| || || | ||||| || || ||| | || | ||| Sbjct 50925 ATCCGCTGGAATACCTTCCTTATCTGTGACTTTCTG-TTTAACATTCTCAATTGAGTCAT 50867 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||| || || |||| || ||||| | || || || ||||| || || | ||||||| Sbjct 50866 TGGACTCAACATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGT 50807 Query 44340 TGT 44342 ||| Sbjct 50806 TGT 50804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987881642158