Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq57 134 2e-26 seq1 84.2 3e-11 >seq57 Length=415752 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 155864 GTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAA 155923 ||| | |||||||||||| | ||| || |||||||| ||||| ||||| || || | | Sbjct 208938 GTGAATCTTTAAAATTTGCAAACGTCCATTTTCATCAGGTAAACCAATCTCCATTTGTAC 208997 Query 155924 TTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACC 155983 || || | ||||| | ||| ||||||||||| | | ||| |||||| |||||||| Sbjct 208998 CTCAAATCTTCCAGGACGTAACAATGCTTCGTCTAACATGTCCAATCTGTTAGTCATACC 209057 Query 155984 TATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGAC 156043 || |||||||| ||||| ||||| | |||||||| || || ||| ||||||||||| Sbjct 209058 GATAATTAAAATATTGTTCAAAGAATTAACACCGTCAATCTTGCTCAACAATTGATTGAC 209117 Query 156044 TACGGCGTCGTG 156055 | || ||| || Sbjct 209118 AATGGAGTCTTG 209129 >seq1 Length=149384 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 63716 TCGTTAAAATAAAATTAAGATCTTCTAA-AATACCAGAAATAGGTGATAAATTTGCTTCT 63774 ||||||| | ||| | ||| || ||| ||| ||| |||| || || ||||| | ||| Sbjct 116560 TCGTTAAGGTTAAAGTCAGAG-TTGTAAGAATTCCACAAATTGGAGACAAATTCTCCTCT 116502 Query 63775 TTTACAGCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACC 63834 | |||||||||||| |||||||| | ||| ||||||| ||| ||||||| || Sbjct 116501 CGCCACGGTCAAAAAGGTACTTGTGGTATCACTTACAGACAAGAGGATTTGCCTTTCACT 116442 Query 63835 AAAGACGGTATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCCCAGTCGTATGACC 63894 || ||||| || || ||| | | ||||||| || || |||| |||||||||| Sbjct 116441 CGTGAAGGTATTGTGCCAGATATTATTGTCAATCCGCATGCCATTCCATCTCGTATGACC 116382 Query 63895 GTT 63897 || Sbjct 116381 ATT 116379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667070413735440