Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq42 165 2e-35 seq29 165 2e-35 seq82 141 2e-28 seq151 113 1e-19 seq38 98.7 2e-15 seq26 93.3 1e-13 seq76 86.0 2e-11 >seq42 Length=292872 Score = 165 bits (182), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || ||||| || || || || ||||| || | || Sbjct 165715 CAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAATGAT 165774 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| |||||| || ||||| |||||||| || || ||||| ||| Sbjct 165775 ACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAA 165834 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 |||| ||||| |||||||| || | ||||| ||||| || |||| | ||||| ||| | Sbjct 165835 AGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAAC-CTTGTCTGATTACAACAT 165893 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||| |||| | ||||||||||||||| Sbjct 165894 TCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGA 165933 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || || || || || | || || ||| | || Sbjct 166171 CAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAATGAT 166230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| |||||| || || || ||||| || ||||| ||||| ||| Sbjct 166231 ACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAACAA 166290 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | ||||||||||| || || ||||||| ||| | Sbjct 166291 AGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAACATT 166350 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 |||||||| || || || || |||||||||||| Sbjct 166351 CAAAAAGAGTCTACTCTTCACCTTGTTTTGAGA 166383 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || || | || || ||| | ||| Sbjct 165943 CAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAACGAC 166002 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||| || || ||||| || || || || || ||| Sbjct 166003 ACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAA 166062 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| ||||| ||||| |||| || ||| | Sbjct 166063 CGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAACATT 166122 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| ||| |||| |||||| | ||| | ||| Sbjct 166123 CAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGA 166161 >seq29 Length=427163 Score = 165 bits (182), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GA 177982 |||||||||||||||||| | |||||||| || ||||| | || || | || || | || Sbjct 49052 CAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTG-AATCTAACGA 49110 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||| |||||||||||||| ||||||||| || || || || || || || || || || Sbjct 49111 CACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCAACA 49170 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| | || ||||| || || || | |||||||| || || ||| ||||||| ||| | Sbjct 49171 ACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAACAT 49230 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| |||||||| || || |||||| ||||| | ||| Sbjct 49231 CCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGA 49270 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || ||||| || || || ||| | ||| Sbjct 48558 CAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAACGAC 48617 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| ||||| || ||||| |||||||| || || || || ||| Sbjct 48618 ACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAACAA 48677 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| ||||| |||||||| || | ||||||||||| || |||| |||| || ||| | Sbjct 48678 AGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAAC-CTTGTCCGACTACAACAT 48736 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || ||||| | ||||||||| Sbjct 48737 TCAAAAGGAATCCACTCTCCACCTTGTCCTCAGACTCAGA 48776 >seq82 Length=211372 Score = 141 bits (156), Expect = 2e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || ||||| | ||||| ||| | ||| Sbjct 147929 CAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAACGAC 147870 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||||||| ||||| ||||| || ||||| || || ||| Sbjct 147869 ACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAA 147810 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| |||||||| || | |||||||| || || |||| | || || ||| | Sbjct 147809 AGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAAC-CTTGTCTGACTACAACAT 147751 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| ||| |||| | || |||||| | ||| Sbjct 147750 TCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGA 147711 >seq151 Length=76492 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | ||||| || ||| | |||||||| || ||||| | || | || | ||| Sbjct 51040 CAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGAGTCCAATGAC 51099 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || |||||||| || ||||||| || || ||||| || || |||| || ||| Sbjct 51100 TCGATTGAGAACGTGAAGAGAAAGATTTGTGATAAGGAAGGTATTCCAGCGGATCAACAA 51159 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || | ||| |||||||| | || |||||||| || || | || |||| | | Sbjct 51160 CGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTATAGCTTG 51219 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||| ||||| | ||||||||||||||||| Sbjct 51220 CAAAAAGATTCAACTATCCATCTTGTTTTGAGACT 51254 >seq38 Length=237352 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | || |||| |||| | || |||||||| ||||| | |||| || | ||| Sbjct 109288 CAACTCTTTGTGAGAACTTTAACTGGAAAAACAATCACTTTGGAGGCAGAGATGAATGAC 109229 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||| || || |||||| || || || || || ||| |||| || ||| Sbjct 109228 ACTATTGAGAGTGTAAAGAGTAAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAACAA 109169 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||| || || || || | || |||||||| ||| | ||| || ||| | Sbjct 109168 AGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAACATT 109109 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || | ||||||||||||||| Sbjct 109108 CAAAAGGATTCCACTCTACACTTGGTTTTGAGACTCAGA 109070 >seq26 Length=133099 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| | || || || || || ||| | || || || | ||| Sbjct 73065 CAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTCCAATGAC 73124 Query 177984 ACCATCGAGAACGTCA--AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||||| | ||||| | | || || ||||| || || | || || | Sbjct 73125 TCGATCGAGAACGTCAAGAGCAAAATAGCC--GATAAGGAAGGGATTCCAGCCGATCAAC 73182 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 ||||| | || ||||| |||||||| | || |||||||| || |||| | ||||| | | Sbjct 73183 AACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAAC-CTTGTCTGATTACAGC 73241 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || || ||||| | || |||||| Sbjct 73242 GTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGA 73277 >seq76 Length=223365 Score = 86.0 bits (94), Expect = 2e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| || || |||||| || ||||| ||||| || ||||| || || Sbjct 84454 GACACCATCGAGAATGTGAAGTCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAA 84395 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| || | || || || || || || | || ||||| || || | | || || ||| Sbjct 84394 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCTGACTACAAC 84335 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||| ||||| || || || | || |||||| | ||| Sbjct 84334 ATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGA 84293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722347309356