Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9 125 7e-24 seq231 102 8e-17 >seq9 Length=695587 Score = 125 bits (138), Expect = 7e-24 Identities = 373/568 (66%), Gaps = 23/568 (4%) Strand=Plus/Minus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || ||| ||||| || ||||| ||||| || | || | ||| || || || | Sbjct 332910 TAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGA 332851 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 ||| || ||||| || ||||||||||||||||| || | | ||| || || || Sbjct 332850 TAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAA 332791 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || ||||| ||| ||||||| || | |||| ||| || || | || ||| Sbjct 332790 GAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGAATT 332731 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | ||||||||| | |||| | ||||| | || | | | || || ||||| Sbjct 332730 A---ATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGC 332674 Query 16438 CTTAAACA----ATTTCT--CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 | ||| | |||||| || ||| | || || | | || ||||| || Sbjct 332673 ATGAAATAGACGATTTCTTTCTCTTTGGTCTTTA---ATCAGA---GTTTCAATGAGAGT 332620 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| |||||||| | || || || || ||||| || |||||||||||||| |||| || Sbjct 332619 ACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGC 332560 Query 16552 CTCCGCTATTTGTACTT---CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 || | || ||| |||| ||| | ||| ||| || || ||||| || || || Sbjct 332559 TTCTGGTACTTGAACTTGTGCCATG---AATTGTTGACATAGATTTTCATTGACAATTCC 332503 Query 16609 GTCACTTGCAGCAAAAAACGCCAATA-TGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 ||||| || ||||| || |||| | ||| ||| ||||||| || ||| | ||| | | Sbjct 332502 ATCACTGGCTGCAAAGAAGGCCAGCACTGT-CTTGATGAAATGTTGTTCATTAGAATTGA 332444 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | | | ||| || ||| ||| || | ||| || || || ||||| || || Sbjct 332443 GTTTTTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAG 332384 Query 16728 CCACTGCCTTTTTATACATTTTCCAAAT 16755 ||| || |||||| ||||||| ||| || Sbjct 332383 CCATTGTCTTTTTGTACATTTCCCACAT 332356 >seq231 Length=8293 Score = 102 bits (112), Expect = 8e-17 Identities = 194/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 || ||||| || ||| |||||||| | || || || || ||||| || ||||||||| Sbjct 1204 GTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCA 1145 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTT---CCACGTAAAATCGTTCCGCCAGGTTC 16594 ||||| |||| || || | || ||| |||| ||| | ||| ||| || || Sbjct 1144 TAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATG---AATTGTTGACATAGATTT 1088 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATA-TGTGCTTAATGAAATATTT 16653 ||||| || || || ||||| || ||||| || |||| | ||| ||| ||||||| || Sbjct 1087 TCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGT-CTTGATGAAATGTTG 1029 Query 16654 TTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 ||| | ||| | || | | ||| || ||| ||| || | ||| || || || Sbjct 1028 TTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCAC 969 Query 16714 CGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 ||||| || ||||| || |||||| ||||||| ||| || Sbjct 968 TGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACAT 927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409388138880