Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq102 196 3e-45 >seq102 Length=34929 Score = 196 bits (216), Expect = 3e-45 Identities = 503/753 (67%), Gaps = 26/753 (3%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT--AATGT 101591 ||||||||||| | ||||||||| ||| ||||| | ||| |||| ||| | ||||| Sbjct 32733 TAAACAGCCATTTCCATTTTAATAGTAGCATGTGGTTCATAATTTTGTAAAGTTAAATGT 32674 Query 101592 CATCTGCTTTAAAGTCATCAATGC-----ATGAAACATTTCTAGCAAATCTAAGTGTTGG 101646 || |||||| |||||||| ||| || | | || || ||| | || Sbjct 32673 --TCAAATTTAAAATCATCAATATTAGTAATGGAAGGAT-CAAGTAA---TAAAAGAGGG 32620 Query 101647 AAACGGTCTAGGAGTTCGCGTCAACT-GCATTTTAAGAGCATCAATGTGATCTACATAGA 101705 ||| | | | ||| || |||| | | |||| | || ||||| |||| ||| | Sbjct 32619 AAATGTTTT-GGATCTCTT-TCAATTTGTTTTTTCAAAGGTTCAATATGATTCTTATAAA 32562 Query 101706 TGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAA 101765 || | ||| || | ||||| ||||| || ||||| || |||| || || || | Sbjct 32561 CATGTGTATCACCCAATGTATGAATAAAATCACCAGGTTTTAAATTACAAACTTGTGCCA 32502 Query 101766 TCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAG 101825 | | | ||||| | || ||| ||||| |||||||| || ||||| ||||||||| Sbjct 32501 TTAATCTTGTTAATAAAGCATATGATGCAATATTAAATGGAACACCTAATCCCATATCAC 32442 Query 101826 CTGATCTTTGATACAGTTGACA--GGAAAGC-TTTCCATC---ACAGACATAAAATTGAC 101879 |||||||||||||| |||||| || | || ||| | || ||||||||| Sbjct 32441 ATGATCTTTGATACATTTGACAACTTAATTCATTAGTATCTGTATCTACCCAAAATTGAC 32382 Query 101880 TTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACA 101939 | || ||||||||| || || |||| ||||| | ||||| |||||||| ||| | | Sbjct 32381 ACATTAAATGACAAGGTGGTAATGCCATATTAGGTAAATCTGATACATTCCATGCAGATA 32322 Query 101940 TTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGT 101999 || || | ||||| || || || | |||| ||| ||||| | | || ||||| | Sbjct 32321 ATATAATACGTCTATTAGTTGGATTATTCTTTAAAGTTTCAATACATTTCTTCAATTGAT 32262 Query 102000 CAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATAT--TCTGCTCCGAAATGCCT 102057 ||||||| | | ||||||| | | || |||| || | || |||| || Sbjct 32261 CAACTCCCTTATTTGTATAATCTGTATGCATATTTTCATATGAACTACCCC--AATGTCT 32204 Query 102058 CCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTT 102117 ||| ||||| ||||| ||||| || | ||| || || | | | ||| || | | Sbjct 32203 CCATTGAAAACCATAAACAGGACCCAAATCCATCTCTTCACGATTCTCAAATCCCAATGA 32144 Query 102118 ATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTC 102177 ||||||| || ||| |||||||| |||||||||| || | | | | |||| Sbjct 32143 ATCTAAATATTCTCTCGATCCATTTCCATCCCAAATATGAATATCTTGTTCAGATAAAAT 32084 Query 102178 TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAA 102237 ||| | ||| ||| || ||||| || | ||||| | |||||||| ||||||| Sbjct 32083 TTTAGCATTTGTACTTCCAGAAATGAACCAAAATAATTCTTTAGCAACACCTTTCCAAAA 32024 Query 102238 TACTCTCTTAGTAGTTAAAAGTGGAAATTCATT 102270 |||||| ||||| ||||| | ||||||| |||| Sbjct 32023 TACTCTTTTAGTTGTTAATAATGGAAATACATT 31991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247748244784