Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 239 5e-58 seq38 226 3e-54 seq231 210 3e-49 seq62 194 2e-44 >seq9 Length=695587 Score = 239 bits (264), Expect = 5e-58 Identities = 427/613 (70%), Gaps = 8/613 (1%) Strand=Plus/Minus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 |||||||||||||| |||| || || || | | || ||||| || || || | Sbjct 332909 AAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGAT 332850 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 | || ||||| || ||||| || || | ||| || || || ||| |||||| ||| Sbjct 332849 AAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAG 332790 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCGGCGCTGTCATG 24310 |||||||| || || ||||| || | | |||||| || | | | | | || Sbjct 332789 AAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGA-ATT 332731 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| || ||||| | || ||||||| || | || | ||| || || |||| Sbjct 332730 AATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATG 332671 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAA-CATATGTATCAATCAAAAGACTATACA 24429 ||| ||| ||| |||| | ||||||| || | || ||||| | | |||||||| Sbjct 332670 AAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACA 332612 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC-GGTA 24488 |||| | |||||| ||||||||||| ||||||||||| ||||||||||| || || |||| Sbjct 332611 TTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTA 332552 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 | || |||| | ||| ||| || ||||||||| || ||||| ||||||||| Sbjct 332551 CT-TGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCT 332493 Query 24549 GCAAAAAACGCCAATACATGTTTT-ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || |||| || ||| || || |||| || ||| | | | ||||| | ||| Sbjct 332492 GCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCA 332434 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | ||||| | | ||| || || ||||||||||| ||||| ||| || ||| Sbjct 332433 TTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTT 332374 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 ||| ||||| | ||| || | | |||| |||| |||||| | |||||| | || ||||| Sbjct 332373 TTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATT 332314 Query 24728 TTTTGCAAGGATT 24740 || | |||||| Sbjct 332313 TTCTTTGAGGATT 332301 >seq38 Length=381539 Score = 226 bits (250), Expect = 3e-54 Identities = 823/1275 (65%), Gaps = 21/1275 (2%) Strand=Plus/Minus Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG- 53441 |||| |||| || || |||| |||||| || ||| ||||| || || | ||| Sbjct 296241 TCCTTCATAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGG 296183 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 || | | ||||||||||| ||||| | | | || || | || ||||| || || | Sbjct 296182 CAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGA 296123 Query 53502 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 ||||| | | || || || || || || ||||||||||| | ||| || |||| Sbjct 296122 ATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTC 296063 Query 53562 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 53621 | ||||| ||| | | |||||| | || |||||||| |||| ||||| | Sbjct 296062 TGTGTCTAAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCT 296003 Query 53622 TATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-- 53676 |||| | || || |||| ||||| || || | | || | |||| | Sbjct 296002 TATTCAAATTGTAAGTGGCAATC---TTGACAACTTCGTATAACTTTTGGTGATCATAGG 295946 Query 53677 -TTGTCCATCT--ATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732 ||| ||| ||| ||| || | | |||||| || || ||||| || || | Sbjct 295945 TTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAA 295886 Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 | |||| || | | | | ||| || || ||||| || | ||| | |||||||||| | Sbjct 295885 CTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTAC 295826 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||||||||||| ||| | ||||| | |||||| || | ||| |||| || Sbjct 295825 CAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACAC 295766 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 |||||||||| |||| ||| ||||| || ||||| | ||||||| || | | Sbjct 295765 CAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCT 295706 Query 53913 TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACAT 53972 || | ||||||||| ||| ||||| ||| | | || || || |||||||||| Sbjct 295705 TGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACAT 295646 Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 54032 | | || || ||||| ||||| | | ||||| || | |||||||| || | Sbjct 295645 CAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACAC 295586 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092 ||| ||| |||||||| | ||| | | | | |||| |||||| | ||| ||| | Sbjct 295585 GTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTT 295526 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | || || ||||||| | | ||| | || | | ||| ||||| ||||| ||||||| Sbjct 295525 CCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCA 295466 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 54212 | || |||| | | || | || || || ||||| | ||||| || |||| Sbjct 295465 AATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGT 295406 Query 54213 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 54272 ||| ||||||||||||||||||| | |||||| |||| || || || || || | Sbjct 295405 CATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGT 295346 Query 54273 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 | |||| || | |||||| || ||| | ||| || || || || || || | Sbjct 295345 ATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAA 295286 Query 54333 TTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 54391 | | || || || |||| |||||||| || || | || ||||||| |||| | Sbjct 295285 TAAGGGCACA-AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAA 295227 Query 54392 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 54451 | || ||||| | |||||| || ||| || ||||| || || || ||||| Sbjct 295226 ACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAG 295167 Query 54452 GCGTGCGTAAACCATTTTTC-AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC 54510 || || |||| ||| | | |||| || || || | || ||| || || || Sbjct 295166 GCATGAATAAA-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTC 295108 Query 54511 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT--- 54567 | | || || |||| |||||||| |||||||| || |||||||| | || Sbjct 295107 ACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTCGGCAATACG 295048 Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 | | | | ||| ||||||||| | |||| | ||| || | ||||| || | | | Sbjct 295047 ACTATCGGCAAGTTTGAGCAAGTAGCTTCTTTCGAGAGTCTTGTATCCAAAGTAATCGAA 294988 Query 54628 TGAAAAGTCTCGTTC 54642 | || |||| ||| Sbjct 294987 TTGGAAATCTCTTTC 294973 >seq231 Length=8293 Score = 210 bits (232), Expect = 3e-49 Identities = 357/504 (71%), Gaps = 10/504 (2%) Strand=Plus/Minus Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCGG 24300 |||||| ||||||||||| || || ||||| || | | |||||| || | | Sbjct 1370 TCCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATT 1311 Query 24301 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | | | || ||||| || ||||| | || ||||||| || | || | ||| | Sbjct 1310 CTCAGA-ATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTAT 1252 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAA-CATATGTATCAATCAAA 24419 | || |||| ||| ||| ||| |||| | ||||||| || | || ||||| | | Sbjct 1251 CAATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGA 1193 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 |||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 1192 GTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTT 1133 Query 24480 GCCTC-GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 24538 || || |||| | || |||| | ||| ||| || ||||||||| || ||||| Sbjct 1132 GCTTCTGGTACT-TGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCC 1074 Query 24539 GTCACTGGCTGCAAAAAACGCCAATACATGTTTT-ATAAAATATTTTTCGTCTGGTGTT- 24596 |||||||| ||||| || |||| || ||| || || |||| || ||| | | | ||| Sbjct 1073 ATCACTGGCCGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCAT-TAGAGTTG 1016 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 ||||| | ||| ||| | ||||| | | ||| || || ||||||||||| ||||| Sbjct 1015 AGTTTTTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAA 956 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 24716 ||| || |||||| ||||| | ||| || | | |||| |||| |||||| | |||||| Sbjct 955 GCCATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAA 896 Query 24717 CTATTTGGATTTTTTGCAAGGATT 24740 | || ||||||| | |||||| Sbjct 895 CGATGAGGATTTTCTTTGAGGATT 872 >seq62 Length=286411 Score = 194 bits (214), Expect = 2e-44 Identities = 413/604 (68%), Gaps = 12/604 (2%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 ||||| || ||||| ||||| || || || | |||||||| ||||| || | Sbjct 259943 AAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCC 260002 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 | || ||||| || ||||| || || | |||||| ||||| || || ||||| ||| Sbjct 260003 AAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAG 260062 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGC-AATAAGTCTTTCTCCATA-ACCGGCGCTGTCAT 24309 ||||| ||||| || |||||||| ||||| | ||| || | | | | | | Sbjct 260063 AAAATACCTTCAACACAAGCAAAGGCCAATAAA-CGTTCGGCAAATAAATTCTCATTATT 260121 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 | ||||| || ||||||| |||||||||| |||| | || | || || || |||| Sbjct 260122 G-ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCAT 260180 Query 24370 TAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || | ||| || ||| || || | ||||| || | || ||||| | ||||| Sbjct 260181 TGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCAAA-GTTTCAATGAGTGTACTAT 260237 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 ||||||| | ||| || |||||||| || ||||| || |||||||||||||| || || | Sbjct 260238 ACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTG 260297 Query 24487 TAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 || ||||| || | || |||| ||| ||||||||||| || || ||||| Sbjct 260298 GTATTTGTACCTC-AGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGAC 260356 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 || ||||| || || || ||| || ||||| | || ||||| |||||| | | || Sbjct 260357 GCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTC 260416 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | | ||||| | | ||| |||||||| | ||||| || |||||| ||| Sbjct 260417 CATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCC 260476 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || |||||||| | ||| || | |||||| | || || | ||||| | | |||| Sbjct 260477 TTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGA 260536 Query 24726 TTTT 24729 |||| Sbjct 260537 TTTT 260540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715781528320