Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq231 89.7 5e-13 seq7 89.7 5e-13 seq9 84.2 2e-11 >seq231 Length=8293 Score = 89.7 bits (98), Expect = 5e-13 Identities = 190/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||||||| | ||| || |||||||| || |||||||| || || Sbjct 927 ATGTGGGAAATGTACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTT 986 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || || | | || ||||| | ||| || || | |||||||||||| Sbjct 987 CACACTGATATAACTGAATGGGAAAAACTCAACTCTAATGAACAACATTTCATCAAGACA 1046 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT-GGTCGAGCGTT- 116813 ||||||||||| || || ||||| || || || ||||| || ||||| ||| | || Sbjct 1047 GTGCTGGCCTTCTTTGCGGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTC 1106 Query 116814 -TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 | || | | || || || | || || | || ||||| || ||||| || ||||| Sbjct 1107 ATGGCAC---AAGTTCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATT 1163 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACAC 116913 || || | || | ||||||||| || ||||| || || Sbjct 1164 GAAAATATTCATGCTGAAATGTATAGTACTCTCATTGAAAC 1204 >seq7 Length=693645 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||| |||| || || || ||||| || ||||||||||| | || || ||| | | Sbjct 370809 AATGCAATTATTTGTCAAGACACTCACTGGTAAAACCATCACATTGGAAGTTGAATCTAA 370868 Query 40749 CGA--CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || || || ||||| ||||| ||| |||| || || || || || || | || Sbjct 370869 TGATTCA-ATTGAAAACG-TCAAGTCAAAGATTCAAGATAAGGAAGGAATTCCACCAGAA 370926 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| |||||||||| || || ||||| |||| || | | || | || || || Sbjct 370927 CAACAAAGACTCATCTATGCAGGTAAACAATTGGAAGATGGCAGAACTATTAATGATTAT 370986 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || || |||| || ||| | || ||| | ||||| || || Sbjct 370987 AACATTCAAAAAGACTCCACACTTCATTTGGTATTGAGATTGAGAGGAGG 371036 >seq9 Length=695587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 189/281 (67%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||||||| | ||| || |||||||| || |||||||| || || Sbjct 332356 ATGTGGGAAATGTACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTT 332415 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || || | | || ||||| | || || || | |||||||||||| Sbjct 332416 CACACTGATATAACTGAATGGGAAAAACTCAATTCTAATGAACAACATTTCATCAAGACA 332475 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT-GGTCGAGCGTT- 116813 ||||||||||| || || ||||| || || || ||||| || ||||| ||| | || Sbjct 332476 GTGCTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTC 332535 Query 116814 -TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 | || | | || || || | || || | || ||||| || ||||| || ||||| Sbjct 332536 ATGGCAC---AAGTTCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATT 332592 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACAC 116913 || || | || | ||||||||| || ||||| || || Sbjct 332593 GAAAATATTCATGCTGAAATGTATAGTACTCTCATTGAAAC 332633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214150851840