Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq102 167 2e-36 >seq102 Length=34929 Score = 167 bits (184), Expect = 2e-36 Identities = 398/589 (68%), Gaps = 16/589 (3%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| |||||| ||||| || | ||| || || || |||||||| || ||||| | Sbjct 32580 TCAATATGATTCTTATAAACATGTGTATCACCCAATGTATGAATAAAATCACCAGGTTTT 32521 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 |||| | || || || || | | ||||||| || ||| ||||| ||||| || Sbjct 32520 AAATTACAAACTTGTGCCATTAATCTTGTTAATAAAGCATATGATGCAATATTAAATGGA 32461 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACA--GGAAAGC-TTTCCATC- 97226 || |||| |||||||||| |||||||||||| | ||||| || | || ||| Sbjct 32460 ACACCTAATCCCATATCACATGATCTTTGATACATTTGACAACTTAATTCATTAGTATCT 32401 Query 97227 --ACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 | || |||| |||| || || |||||| || || || ||||| || || | |||| Sbjct 32400 GTATCTACCCAAAATTGACACATTAAATGACAAGGTGGTAATGCCATATTAGGTAAATCT 32341 Query 97285 AAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTA 97344 | |||||||| ||| | | | || | ||||| ||||| || | | || || | | Sbjct 32340 GATACATTCCATGCAGATAATATAATACGTCTATTAGTTGGATTATTCTTTAAAGTTTCA 32281 Query 97345 ATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATA 97403 || | ||| ||||||||||| || | ||||| ||| | | | || ||| Sbjct 32280 ATACATTTCTTCAATTGATCAACTCCCTTATTTGTATAATCTGT-ATGCATATTTTCATA 32222 Query 97404 T--TCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 | || | || |||| |||||||| || ||||||||||| || | || ||||| Sbjct 32221 TGAACTACCCC--AATGTCTCCATTGAAAACCATAAACAGGACCCAAATCCATCTCTTCA 32164 Query 97462 CTA-TCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 | | || || || || | ||||||||| || ||||||||| |||||||||| || Sbjct 32163 CGATTCTCA-AATCCCAATGAATCTAAATATTCTCTCGATCCATTTCCATCCCAAATATG 32105 Query 97521 CACACCAGATGCTG-CAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATT 97579 | | | | | | || | || || | ||| ||| || ||||| || |||| Sbjct 32104 AATATCTTGTTCAGATAAAATTTTAGC-ATTTGTACTTCCAGAAATGAACCAAAATAATT 32046 Query 97580 CTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 ||| |||||||| ||||||||||||| ||||||||||| | ||||| Sbjct 32045 CTTTAGCAACACCTTTCCAAAATACTCTTTTAGTTGTTAATAATGGAAA 31997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346780686478880