Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 1e-11 >seq24 Length=427589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/248 (68%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 135598 ACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAA 135657 || ||| |||| ||||||| || ||||| || | | |||||||| || ||||| ||| Sbjct 207347 ACTGATGAAGATGAGTGGAGTATGTGGAGTAAGAGAGGAGATCCTGTCTTACATATTGAA 207288 Query 135658 CTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAA 135717 || | | |||||| | | | | ||||| || || ||||| || ||||| Sbjct 207287 CTACGTAAATGGGCTCAAATACTGTTGATAGCTCCATTGGATTGTAATACTTTGGCAAAG 207228 Query 135718 ATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAAC 135777 || | ||||| || || ||||||||| |||| | | | | ||||| |||||| || Sbjct 207227 ATTTCAAATGGAATTTGTGATAATTTAGTGACATGTGTAGCCAGAGCTTGGGATTTGAAG 207168 Query 135778 AAA---CCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACA 135834 || ||| | || | ||| || ||||||||||| ||| |||||||| | ||| Sbjct 207167 AATTTTCCATTTGTTGTGGCTCCAGCCATGAATACTCTCATGCATGAACATCCATTCACA 207108 Query 135835 GAAAAACA 135842 | ||||| Sbjct 207107 GCCAAACA 207100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923187752671360