Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 seq30 87.8 2e-12 seq52 86.0 7e-12 >seq10 Length=665159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | || ||||||||||| || ||||||||||| || || |||| Sbjct 188401 CCACCTCTTAATCTTAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCAGAG 188460 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || || | ||||||||||| || || |||| || || || | || Sbjct 188461 AGAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGG 188520 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||| ||| ||| || | | | | |||||| | ||||| || Sbjct 188521 ATTCCTTCCTTGTCTTGGATCTTTGACTTAACATTTTCAATAGTGTCGTTTGATTCAACT 188580 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 188581 TCTAAAGTGATAGTCTTACCAGTCAAAGTCTTGACAAAGATTTGCAT 188627 >seq30 Length=401612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || | |||||||||||||| || |||||||||| ||||||||| Sbjct 53628 CCTCCTCTCAATCTCAACACCAAATGCACAGTAGAATCCTTTTGAAGGTTGTAATCACTA 53569 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| || || || || | || | ||| || || || | || Sbjct 53568 ATTGTTCTTCCATCTTCTAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAGGA 53509 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| || | || |||||||| | || | | || || ||| ||||| Sbjct 53508 ATGCCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAATAGTATCATTCGCTTCCATT 53449 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || ||||| || |||| || |||||||||| ||||||| Sbjct 53448 TCAATAGTAATTGTTTTTCCAGTTAAGGTTTTTACAAAGAGTTGCATT 53401 >seq52 Length=331721 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||| ||||||||||| || ||||||||||| || || || | Sbjct 185466 CCACCTCTCAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAG 185407 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || || | || |||||||| || ||||||| || || || | || Sbjct 185406 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGG 185347 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| | |||| ||||| | | | |||||| | ||||| || Sbjct 185346 ATACCTTCCTTGT-CTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTGATTCAAC 185288 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || || || || |||| || || || || ||||||||| Sbjct 185287 TTCCAATGTAATTGTCTTACCAGTTAATGTTTTAACGAAAATTTGCATT 185239 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG-C 43015 || |||||||| | ||| ||||| ||||| || |||||||||||||||||||||| Sbjct 185694 CCACCTCTTAATCTCAAAACCAAGTGCAAAGTTGATTCCTTTTGAATATTGTAATCAGAT 185635 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || |||| || |||||||| || || |||| || || || | || Sbjct 185634 AAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGG 185575 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||| | | ||| |||| | |||| | | | || || | ||||| | Sbjct 185574 GATACCTTCCTTAT-CTTGAATTTTAGACTTGACATTTTCAATTGTATCATTGGATTCAA 185516 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| ||||| || |||| || || || || |||||||| Sbjct 185515 CTTCCAATGTGATTGTTTT-CCTGTTAAAGTTTTGACGAAAATTTGCAT 185468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811996187520