Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9 188 7e-43 seq62 165 8e-36 seq231 123 2e-23 seq79 98.7 9e-16 >seq9 Length=695587 Score = 188 bits (208), Expect = 7e-43 Identities = 609/926 (66%), Gaps = 32/926 (3%) Strand=Plus/Minus Query 15878 AATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACT 15937 ||||| ||||||||||| ||| | || || |||||||| ||||| ||||| | Sbjct 333264 AATTA--TTTAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTGGACATTAT- 333208 Query 15938 GACATTTT--TTG--ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAA 15993 |||| ||| |||||| | |||| |||| ||||| || ||||| ||||| | Sbjct 333207 ---ATTTGCCTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGAC 333151 Query 15994 TGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA 16053 || || | | ||| |||| || |||||| ||| ||| || || |||| || Sbjct 333150 AGATATGATATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCC-AA 333092 Query 16054 TTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCA 16112 | ||| || |||||||| || || | ||| ||||| |||| |||||| || |||| Sbjct 333091 TAGAAACCAACAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCA 333032 Query 16113 TTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTT 16172 |||| || || | ||| || | ||| | | ||| | || || || | ||| |||| Sbjct 333031 TTCCAATCAAATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTT 332972 Query 16173 CA---ATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAA-AC 16228 || | | | || |||| | ||| || || | || ||| || | Sbjct 332971 CATAAACAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTATTTCAA-TGTGGAATAG 332913 Query 16229 ATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288 | || ||| || ||||| ||| || ||||| || | | ||| || || || || ||| Sbjct 332912 AGTAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAAT 332853 Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAA 16348 | | ||| ||||| || || ||||| || | ||| || || | ||| ||||| Sbjct 332852 GATAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAG 332793 Query 16349 AAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttttta 16408 ||||| || || || || |||||||| | ||||| ||| | || ||| | | Sbjct 332792 AAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAA---ATTCTCA 332736 Query 16409 ctttctatccattttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTCTAT 16467 | |||||||| ||||| || ||||| | || ||| | | | ||| || || Sbjct 332735 GAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTA-TCAAT 332677 Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527 |||| ||||| | |||| ||||| | ||| ||| ||| || || || ||| Sbjct 332676 GGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACT 332617 Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||||||| | ||||||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 332616 ATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTC 332557 Query 16588 GGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCT 16647 | || ||| |||| | || || || ||||| || || |||||||| || Sbjct 332556 TGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACT 332497 Query 16648 AGCTGCAAAAAACGCAAGTA-TGTGTTTAATAAAAtttttttCGTTATCTGAA---AGTT 16703 |||||||| || || || | ||| || || |||| || ||| ||| ||| |||| Sbjct 332496 GGCTGCAAAGAAGGCCAGCACTGT-CTTGATGAAATGTTGTTCATTA---GAATTGAGTT 332441 Query 16704 TTAACCAGTCAGAAAAATC-TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||| |||| | ||| | ||| | ||| ||||| || || ||||| || ||||| Sbjct 332440 TTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCC 332382 Query 16763 ACAGCCTTTTTATACATTTTCCATAT 16788 | | |||||| ||||||| ||| || Sbjct 332381 ATTGTCTTTTTGTACATTTCCCACAT 332356 >seq62 Length=286411 Score = 165 bits (182), Expect = 8e-36 Identities = 558/853 (65%), Gaps = 26/853 (3%) Strand=Plus/Plus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAAT-GAAATATTTTCCA 16007 |||||||| |||| ||||||||||||| ||||| || || |||| |||||| | | || Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCA-CTAACAGAAATAATGTTCA 259715 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAACAATA 16064 | |||| || |||||| | | ||| ||| ||||| | || | | ||| | Sbjct 259716 TCCAATCGAATGGATTT---GGAGAATTGTAAATCTTATCATAACCAAGGGATACCAAAA 259772 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 |||||| || || | ||| || || |||| ||||||| | ||||||| || || || | Sbjct 259773 GTCTATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAAT 259832 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 || || | ||| | || | ||||| || | ||| |||||| | || | Sbjct 259833 CTACTGGCAAACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTAG-T 259891 Query 16185 CTCTTACTACACTATTTAACGGAGGGTT--TAA---TAAGTGTTTAA-ACATTATACAAG 16238 | | | ||| || ||| || ||| | | ||| || | | || ||| | Sbjct 259892 GAGTGAACA-ACTTGTTG-CGGCAATTTGGTAAACTTCAATGTGGAATATAATAAACAGG 259949 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||||||| || |||||||| || | ||||| || || || |||| | ||| | Sbjct 259950 CAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCAG 260009 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| || || ||||| || | |||||| || | || |||||||| ||||| |||| Sbjct 260010 GCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATAC 260069 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 ||||||| ||||| || | || || || | | | ||| | | | | |||| Sbjct 260070 CTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAA---TAAATTCTCATTATTGATCC 260126 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 |||| |||||||| ||| || | || ||| | | | || || ||||| || | Sbjct 260127 ATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAACA 260186 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 || || | ||||| | ||| || |||| || || ||| |||||||||||| | Sbjct 260187 AACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTCAG 260246 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 ||| ||||| || || || || || ||||| || || ||||| ||||| | |||||||| Sbjct 260247 CATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTTGTA 260306 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 | |||| ||| || || ||||| || || || || ||| || ||||| | Sbjct 260307 CCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCAAAGA 260366 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttttttCGTT--ATCTGAAAGTTTTAACCAGTCAGA 16716 | || | | || ||||| | || |||||| | | || || | ||| | | Sbjct 260367 AAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGT--CCATTGTGT 260424 Query 16717 AAAATC-TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTAT 16775 || ||| | ||| | ||| || ||||| ||||||| || || || | ||||| |||| Sbjct 260425 AATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTAT 260483 Query 16776 ACATTTTCCATAT 16788 |||||| ||| || Sbjct 260484 ACATTTCCCAAAT 260496 >seq231 Length=8293 Score = 123 bits (136), Expect = 2e-23 Identities = 302/449 (67%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 ||||| ||||| || || || || |||||||| | ||||| ||| | || | Sbjct 1369 CCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAA---A 1313 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACA-GTTCATGTT 16461 || | | | |||||||| ||||| || ||||| | || ||| | | | ||| Sbjct 1312 TTCTCAGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTA 1253 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || || |||| ||||| | |||| ||||| | ||| ||| ||| || || || Sbjct 1252 -TCAATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAG 1194 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 |||||||||||| | ||||||||| || || || || ||||| ||||| || ||||| Sbjct 1193 AGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCT 1134 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 ||||| | || ||| |||| | || || || ||||| || || ||||| Sbjct 1133 TGCTTCTGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCC 1074 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTA-TGTGTTTAATAAAAtttttttCGTTATCTGAAA 16700 ||| || || ||||| || || || | ||| || || |||| || ||| ||| | Sbjct 1073 ATCACTGGCCGCAAAGAAGGCCAGCACTGT-CTTGATGAAATGTTGTTCATTAGAGTTGA 1015 Query 16701 GTTTTAACCAGTCAGAAAAATC-TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759 ||||| ||| |||| | ||| | ||| | ||| ||||| || || ||||| || ||| Sbjct 1014 GTTTTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAA 956 Query 16760 GCAACAGCCTTTTTATACATTTTCCATAT 16788 || | | |||||| ||||||| ||| || Sbjct 955 GCCATTGTCTTTTTGTACATTTCCCACAT 927 >seq79 Length=326815 Score = 98.7 bits (108), Expect = 9e-16 Identities = 197/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 58105 ATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACGTA 58164 |||| || || || || ||||| ||||| || || ||| | || ||||| || ||| | Sbjct 192786 ATGTTATTGGTATTGATGAAGGTCAATTCTTCCCTGATTTGGTTGAATTCTGTGAAGCTG 192845 Query 58165 TGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGAGC 58224 || || | || ||||||||||| ||| |||||| || ||||| || |||| | | Sbjct 192846 CTGCTAATGGAGGTAAAATTGTAATTGTTAGTGCTTTGGATGGTACTTTCCAAAGAAAAC 192905 Query 58225 CATTTGGAAATATTTTAAAATTAATACCATGTGCTGAGTACGTTTCAAAGCTTACAGCCG 58284 |||||||||| || | ||| | ||| ||||| ||| || |||| || | Sbjct 192906 AATTTGGAAATGTTCTTTCATTGGTTCCAATGGCTGAAAGTGTTGTGAAACTTAAGGCTG 192965 Query 58285 TTTGCATGAATTGTTTTAATAGCGCATCGTTTTCTAAACGAATTGGAGATGAACAAGAAA 58344 |||| ||| |||| ||| || | || |||||||| || ||||||||| ||| Sbjct 192966 TTTGTATGGTTTGTGGTAAAGATGCTGCCTTCTCTAAACGTATCACTGATGAACAACAAA 193025 Query 58345 TAGAAGTTATAGGAGGCAAAGACAAGTATCAATCTGTATGTAGAAAATGTTA 58396 |||||||| || || || |||||| | |||||||| ||||| Sbjct 193026 CTGAAGTTATTGGTGGATCTGATAAGTATATTGCCACTTGTAGAAAGTGTTA 193077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507467382400