Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq102 260 1e-64 >seq102 Length=34929 Score = 260 bits (288), Expect = 1e-64 Identities = 521/762 (68%), Gaps = 29/762 (4%) Strand=Plus/Plus Query 20032 TTGAGAAATGA---ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTT 20088 ||||||||| | |||||| |||||||| || ||| | |||||||||||||| |||| | Sbjct 31982 TTGAGAAATAATGTATTTCCATTATTAACAACTAAAAGAGTATTTTGGAAAGGTGTTGCT 32041 Query 20089 GAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTA---GAAAAA 20145 |||| ||||| ||||| ||| ||| |||||| ||| | || || ||| || Sbjct 32042 AAAGAATTATTTTGGTTCATTTCTGGAAGTACAAATGCTA---AAATTTTATCTGAACAA 32098 Query 20146 GGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGG-ATTTGA 20204 | || | |||||| | | ||||||| | ||| |||| | || ||| |||||| Sbjct 32099 GATATTCATATTTGGGATGGAAATGGATCGAGAGAATATTTAGATT-CATTGGGATTTGA 32157 Query 20205 CAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGC 20264 || ||| ||||| ||||||||||||||| ||||| |||||||||||||||| || Sbjct 32158 GAATCGTGAAGAGATGGATTTGGGTCCTGTTTATGGTTTTCAATGGAGACATTGGGGTAG 32217 Query 20265 TGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATT-ACAAAATG 20323 | ||||| | ||| | ||| ||||| | ||||| |||||||| | ||||| Sbjct 32218 TTCATATGAAAATATGCATACAGATTATACAAATAAGGGAGTTGATCAATTGAAGAAATG 32277 Query 20324 TTATTAATTTAATTAAA-ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAAC 20382 | | || | ||||| | || |||| | ||| | ||||| |||| || ||||| Sbjct 32278 TATTGAAACT--TTAAAGAATAATCCAACTAATAGACGTATTATATTATCTGCATGGAAT 32335 Query 20383 GCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGT- 20441 | |||| | ||| ||||| || || || |||||| | | || ||||||| || Sbjct 32336 GTATCAGATTTACCTAATATGGCATTACCACCTTGTCATTTAATGTGTCAATTTTGGGTA 32395 Query 20442 -----TGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTG 20496 | || ||||||||| ||||||||||||||| |||| |||||||||| | Sbjct 32396 GATACAGATACTAATGAATTAAGTTGTCAAATGTATCAAAGATCATGTGATATGGGATTA 32455 Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 |||||||| || ||||||||| ||||| | | || | || ||||| ||| Sbjct 32456 GGTGTTCCATTTAATATTGCATCATATGCTTTATTAACAAGATTAATGGCACAAGTTTGT 32515 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 |||||||| | ||||| || | || || | || || | ||| |||| |||||| Sbjct 32516 AATTTAAAACCTGGTGATTTTATTCATACATTGGGTGATACACATGTTTATAAGAATCAT 32575 Query 20617 ATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATT 20676 || |||||||| ||| ||| | | || | |||||||| |||| ||||| ||| Sbjct 32576 ATTGAACCTTTGAAAAAACAAATTGAAAGAGATCCAAAACATTTCC---CTCTT-TTATT 32631 Query 20677 ACTCGA----ACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGG 20732 ||| || | ||| ||||| | ||||||||| ||| |||| ||| || Sbjct 32632 ACTTGATCCTTCCATTACTAATATTGATGATTTTAAATTTGAACATTTAACTTTACAAAA 32691 Query 20733 TTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 |||| | || ||| | | ||| |||||||||| ||||||| Sbjct 32692 TTATGAACCACATGCTACTATTAAAATGGAAATGGCTGTTTA 32733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180185796880