Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq79 93.3 3e-14 seq27 87.8 1e-12 >seq79 Length=326815 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || ||||| |||| || ||||| |||||||| ||||| | Sbjct 172956 CCACCTCTCAATCTCAAAACCAAATGCAAAGTAGATTCCTTTTGAATGTTATAGTC--TG 173013 Query 45170 AGTTGG--CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || || | | | || |||| ||| || || || || ||||| | ||||| || |||| Sbjct 173014 AGAGGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAG 173073 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||| || ||| || |||||| | | | |||| || | Sbjct 173074 GGATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCAATGGTGTCGTTTGATTCAA 173133 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| |||||| || || || |||| ||| || || ||||||||||| || Sbjct 173134 CTTCCAAGGTAATAGTTTTACCGGTCAAAGTTTTAACGAAGATTTGCATCTT 173185 >seq27 Length=417575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| |||||||||||||| || ||||| || |||||||| || | Sbjct 23477 CCACCTCTCAATCTCAATACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGAC 23536 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || |||| |||||| || ||||| ||||| | ||||| || |||| Sbjct 23537 AAGGTT--CTTCCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAG 23594 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || ||||| || || || |||||| | | |||| ||| | Sbjct 23595 GGATTCCTTCCTTATCTTGGATCTTAGACTTAACATTTTCAATTGTGTCATTGGACTCGA 23654 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| ||||| ||||| || || | ||| || || || |||||||| Sbjct 23655 CTTCCAATGTAATGGTCTTTCCTGTTAAAGTTTTAACGAAAATTTGCAT 23703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071425056464