Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9 196 5e-45 seq62 185 8e-42 seq231 145 7e-30 >seq9 Length=695587 Score = 196 bits (216), Expect = 5e-45 Identities = 635/970 (65%), Gaps = 26/970 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT- 13914 ||||||||| |||| || ||||| ||||| | || || || || | |||| Sbjct 333257 TAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTGGACATTAT----ATTTGC 333202 Query 13915 -TTG--ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| |||||| | |||| | || ||||| ||||| || || || | ||||| | Sbjct 333201 CTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGAT 333142 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 | ||| |||| |||||||||| ||| || | | || ||| | || | | | Sbjct 333141 ATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCCAATAGAAACCAA 333082 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||||| |||| | ||||||||||| |||||| || |||||| || || | Sbjct 333081 CAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAA 333022 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA- 14150 | || || | | | | | |||||| || || || ||||| || | | || Sbjct 333021 ATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAG 332962 Query 14151 TAATCGTAATAATT--TCATTAGAAGGAGGATATTTTAGATGTTTAAAA-ATTAAACACG 14207 | | | | || || | | | || ||||| | |||| || | | |||||| | Sbjct 332961 TGAATGAACTACTTGTTGAGGTAATTTAGTGTATTTCA-ATGTGGAATAGAGTAAACATG 332903 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 | ||||| ||| | || ||||| | | || | ||| || || |||| ||| || | Sbjct 332902 CGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAG 332843 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 |||||| || ||||| |||||||| || |||| | || ||| || ||||| |||| Sbjct 332842 GCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTC 332783 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 |||| || ||||| || | |||| ||| ||||| | || | | | |||| Sbjct 332782 CCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAA--TTCTCAGAATTA-ATCC 332726 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 |||| ||||| | || ||| |||| || | | ||| ||||| |||| ||||| Sbjct 332725 ATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATA 332666 Query 14448 AATG--TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 | | ||| |||||||| || || ||| || ||||| || ||||||||||| Sbjct 332665 GACGATTTCTTTCTCTTTGGTCTTT--AATCAGAGTTTCAATGAGAGTACTATACATTTC 332608 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 || || || ||||| || || || ||||| ||||| |||||||| ||||||| ||| Sbjct 332607 AGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTG 332548 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 || | || ||| || | ||||||||| || || |||||||| |||||||| Sbjct 332547 AACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAA 332488 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGC 14685 || |||| | | || || || | ||| || | | ||||||||| ||| || | Sbjct 332487 GAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGT 332428 Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 || ||| | |||||| || || || |||||||| || ||| | | ||||| || Sbjct 332427 TATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTA 332368 Query 14746 CATTACCCATATTTCTTTATATAAT--ATAGGAAAAACTACAAATC-TTGAAGATGTTTC 14802 |||| |||| ||| || ||||| | ||||| | ||||| | ||| ||| |||| Sbjct 332367 CATTTCCCACATT--TTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGAT-TTTC 332311 Query 14803 TTTAAGAATT 14812 ||| || ||| Sbjct 332310 TTTGAGGATT 332301 >seq62 Length=286411 Score = 185 bits (204), Expect = 8e-42 Identities = 593/906 (65%), Gaps = 27/906 (3%) Strand=Plus/Plus Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 |||||||| |||| | |||||||||||||| || ||||| | || ||| | | ||| Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCACTAACAGAAATAATGTTCAT 259716 Query 13978 AAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 14037 |||| |||||||||| || | | | |||||| |||| || || | | ||| Sbjct 259717 CCAATCGAATGGATTTGGAGAATTGTAAATCTTATCATAACCAAGGGATACCAAAAGTCT 259776 Query 14038 ATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 14097 ||| |||| | ||||| ||||| ||||||| | | |||||||| || | | ||| Sbjct 259777 ATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAATCTAC 259836 Query 14098 AGGAATTATATTGGTTAAA--AATTCTTTTTCTATAGACACAGCCTCGTTTA-TAATAAT 14154 || | | || ||| ||||| ||||| || ||||| || | || | | Sbjct 259837 TGGCA--AACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTAGTGAG 259894 Query 14155 CGTAATAATTTCATTAG--AAGGAGGATATTTTAGATGTTTAAAA-ATTAAACACGCAAA 14211 | || || || | | || || | || |||| || | | |||||| ||||| Sbjct 259895 TG-AACAACTTGTTGCGGCAATTTGGTAAACTTCAATGTGGAATATAATAAACAGGCAAA 259953 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 |||| || | || ||||| | || | ||| || || |||| || || ||||| Sbjct 259954 ATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCAGGCAT 260013 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 | || ||||| || |||||||| || | | ||| || || || ||||| || || || Sbjct 260014 GAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATACCTTC 260073 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA-TGCT--TTTTTGTTCGATATCCA 14388 ||| |||||| || | ||| ||||| |||| | | || || ||| ||||| Sbjct 260074 AACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTATTG------ATCCA 260127 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||| ||||||| | || |||| | | | | || ||||| ||||| || || Sbjct 260128 TTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAACAA 260187 Query 14449 ATGTT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | | | | |||||||| | ||| | | | || ||||| ||| |||||||||||| Sbjct 260188 ACGATGTCTTTCTCTTTGATCCTTTA--TCAAAGTTTCAATGAGTGTACTATACATTTCA 260245 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 | || || ||||| ||||| || || ||||| || |||||||| ||||||| |||| Sbjct 260246 GCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTTGT 260305 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 ||||| | |||| || | |||||||||||| || ||||| || || ||||| Sbjct 260306 ACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCAAAG 260365 Query 14627 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG--AGTTTTTTCCAATCGG 14684 || || || | | || ||||||| ||| || | ||| || | | |||| | | Sbjct 260366 AAAGCTAAAACACTCTTGATAAAGTGTTGTTCGT--TTGGTGTCAAGGTGGTCCATTGTG 260423 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 | ||| | |||||| ||||| ||| | ||||| || || | || || |||| Sbjct 260424 TAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTAT 260483 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TTGAAGATGTTTCT 14803 ||||| |||| || | | |||| | ||| || | ||||| | || ||| || || Sbjct 260484 ACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGATTTTCCT 260543 Query 14804 TTAAGA 14809 | |||| Sbjct 260544 TCAAGA 260549 >seq231 Length=8293 Score = 145 bits (160), Expect = 7e-30 Identities = 356/531 (67%), Gaps = 13/531 (2%) Strand=Plus/Minus Query 14287 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 |||||| || |||| | || ||| || ||||| |||||||| || ||||| || Sbjct 1394 TAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGC 1335 Query 14347 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14406 | |||| ||| ||||| | || | | | |||||||| ||||| | || Sbjct 1334 CAACAATCTTTCAGCAAACAAA--TTCTCAGAATTA-ATCCATTTCAATGCCCAGTTAGC 1278 Query 14407 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG--TTCCTTCTCTTTA 14464 ||| |||| || | | ||| ||||| |||| ||||| | | ||| |||||||| Sbjct 1277 TTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTTTG 1218 Query 14465 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524 || || ||| || ||||| || ||||||||||||| || || ||||| || Sbjct 1217 GTCTTT--AATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATG 1160 Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTT 14584 || || ||||| ||||| |||||||| ||||||| ||| || | || ||| | Sbjct 1159 GCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGT 1100 Query 14585 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14644 | | ||||||||| || || |||||||| || ||||| || |||| | | || Sbjct 1099 TGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGTCTTG 1040 Query 14645 ATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCT 14704 || || | ||| || | | | ||||||||| ||| || | || ||| | |||||| Sbjct 1039 ATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGATCA 980 Query 14705 ACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTA 14764 || || || |||||||| || ||| | | ||||| |||||| |||| ||| || Sbjct 979 ACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATT--TTAG 922 Query 14765 TATAAT--ATAGGAAAAACTACAAATC-TTGAAGATGTTTCTTTAAGAATT 14812 ||||| | ||||| | ||||| | ||| ||| ||||||| || ||| Sbjct 921 GATAATGAAGTGGAAAGAGAACAAAACGATGAGGAT-TTTCTTTGAGGATT 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340873013120