Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq74 100 2e-16 seq14 86.0 5e-12 >seq74 Length=222118 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| | || || ||||||||||| || || || || || |||| | ||||| | | Sbjct 7710 ATGCAACTCTTCGTAAAAACCTTAACTGGAAAGACCATTACTATCGAAATGGAATCAAAC 7769 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| ||| || | | | || |||| || || || ||||| | || || || Sbjct 7770 GACACTGTTGAGAATATGAAACAAAAGATATTTGATAAGGAAGGTATTCCTTCAGATCAA 7829 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || ||||| || |||||| | |||||| || ||||| || ||||||| Sbjct 7830 CAACGTTTGATTTATGCCGGTAAACAATTAGAAGATGGCAGAACTATTAATGATTACAAT 7889 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAA 25066 | || || || | || | |||||||| || ||||| | |||||| || ||| Sbjct 7890 CTTCAAAAGGATTCAACTGTGCATTTAGTATTGAGATTGAGAGGAGGTTAAACAA 7944 >seq14 Length=782252 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24844 GTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGCGACAGTGTAGAA 24903 || ||||||||||| || || || || || | || | |||||||| || | ||| || Sbjct 722947 GTAAAAACCTTAACTGGAAAGACAATTACAATTGAAATGGAATCGAGTGATACTGTTGAG 722888 Query 24904 ACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAACGTTTAATA 24963 | | | || |||| || || |||||||| | || || || ||||| || || Sbjct 722887 AATATGAAACAAAAGATATTTGATAAAGAAGGTATTCCTTCAGATCAACAACGATTGATT 722828 Query 24964 TATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATACAGAAAGAG 25023 ||||| || |||||| |||||||| || || || || ||||||| | || || || Sbjct 722827 TATGCAGGAAAACAATTGGAAGATGGCAGAACCATTAATGATTACAATCTTCAAAAGGAC 722768 Query 25024 GCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | || | |||||||| || ||||| | ||||| Sbjct 722767 TCAACTGTGCATTTAGTATTGAGATTGAGAGGAGG 722733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418300003105280