Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq231 84.2 4e-11 seq9 84.2 4e-11 >seq231 Length=8293 Score = 84.2 bits (92), Expect = 4e-11 Identities = 175/254 (69%), Gaps = 14/254 (6%) Strand=Plus/Plus Query 101516 TGGGAAATGTACAAAAAAGAGGTTGCCTGTTTTTGGACATTGGAAGAGATTGATTTCGAA 101575 ||||||||||||||||| | || | || |||||| |||| ||| ||||| | | Sbjct 930 TGGGAAATGTACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTCAC 989 Query 101576 AGGGATCCTAAAGATTGGGAGAAACTC-ACTCAAGATGAGAAGGATTTCATTCTCCAGA- 101633 | ||| | || ||||| |||||| |||| | |||| | |||||| || ||| Sbjct 990 ACTGATATAACTGAATGGGAAAAACTCAACTCTA-ATGAACAACATTTCA---TCAAGAC 1045 Query 101634 --TTCTGGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATC--TTACAACACGT 101689 | ||||| |||||||| || ||| |||||||| | |||||||| | ||||| | Sbjct 1046 AGTGCTGGCCTTCTTTGCGGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATT 1105 Query 101690 CTTCG-TCAAGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAAT 101748 | | | ||||| || | |||||||| || |||||| || || ||| ||| || Sbjct 1106 CATGGCACAAGT---TCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCAT 1162 Query 101749 GGAGAGTATTCATG 101762 || | |||||||| Sbjct 1163 TGAAAATATTCATG 1176 >seq9 Length=695587 Score = 84.2 bits (92), Expect = 4e-11 Identities = 173/253 (68%), Gaps = 12/253 (5%) Strand=Plus/Plus Query 101516 TGGGAAATGTACAAAAAAGAGGTTGCCTGTTTTTGGACATTGGAAGAGATTGATTTCGAA 101575 ||||||||||||||||| | || | || |||||| |||| ||| ||||| | | Sbjct 332359 TGGGAAATGTACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTCAC 332418 Query 101576 AGGGATCCTAAAGATTGGGAGAAACTCACTCAAGATGAGAAGGATTTCATTCTCCAGA-- 101633 | ||| | || ||||| ||||||| | |||| | |||||| || ||| Sbjct 332419 ACTGATATAACTGAATGGGAAAAACTCAATTCTAATGAACAACATTTCA---TCAAGACA 332475 Query 101634 -TTCTGGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATC--TTACAACACGTC 101690 | ||||| ||||||||| || ||| |||||||| | |||||||| | ||||| || Sbjct 332476 GTGCTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTC 332535 Query 101691 TTCG-TCAAGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAATG 101749 | | ||||| || | |||||||| || |||||| || || ||| ||| || Sbjct 332536 ATGGCACAAGT---TCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATT 332592 Query 101750 GAGAGTATTCATG 101762 || | |||||||| Sbjct 332593 GAAAATATTCATG 332605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574059628720