Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq38 241 2e-58 seq9 214 2e-50 seq231 196 6e-45 seq62 187 3e-42 >seq38 Length=381539 Score = 241 bits (266), Expect = 2e-58 Identities = 779/1197 (65%), Gaps = 18/1197 (2%) Strand=Plus/Minus Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG- 62679 |||| |||| || ||||||| |||||| || ||| |||| || || | ||| Sbjct 296241 TCCTTCATAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGG 296183 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAA 62739 || | | ||||||||||||||||| | | | || || | || ||||| || || | Sbjct 296182 CAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGA 296123 Query 62740 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62799 ||||| | | || || || || || || ||||||||||| | ||| || |||| Sbjct 296122 ATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTC 296063 Query 62800 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62859 | ||||| ||| | | |||||| | || |||||||| |||| ||||| | Sbjct 296062 TGTGTCTAAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCT 296003 Query 62860 TATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-- 62914 |||| | ||| || |||| ||||| || || | | || | |||| | Sbjct 296002 TATTCAAATTGTAAGTGGCAATC---TTGACAACTTCGTATAACTTTTGGTGATCATAGG 295946 Query 62915 -TCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTA 62970 | | ||| ||| ||| || | | |||| | || || ||||| || || | Sbjct 295945 TTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAA 295886 Query 62971 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 | |||| || | | | | ||| || || ||||| || | ||| | ||||||| || | Sbjct 295885 CTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTAC 295826 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | | ||||||||||| ||| | ||||| | |||||| || | ||| |||| || Sbjct 295825 CAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACAC 295766 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150 |||||||||| || | ||| ||||| || ||||| || ||||||| || | | Sbjct 295765 CAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCT 295706 Query 63151 TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63210 || | | ||||||||| ||| ||||| ||| | | ||| || || |||||||||| Sbjct 295705 TGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACAT 295646 Query 63211 TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 63270 | | | || ||||| ||||| | | ||||| || | |||||||| || | Sbjct 295645 CAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACAC 295586 Query 63271 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCT 63330 ||| ||| |||||||| | ||| | | | | |||| |||||| | ||| ||| | Sbjct 295585 GTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTT 295526 Query 63331 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 63390 | || || ||||||| | | ||| | || | | ||| ||||| ||||| ||||||| Sbjct 295525 CCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCA 295466 Query 63391 AGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 63450 | || ||||| | | || | || || || ||||| | ||||| || |||| Sbjct 295465 AATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGT 295406 Query 63451 TATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATAT 63510 ||| ||||||||||||||||||| | ||| |||||| | || || ||||| || | Sbjct 295405 CATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGT 295346 Query 63511 AGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | |||| || | |||||| || ||| | ||| || || || || || || | Sbjct 295345 ATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAA 295286 Query 63571 TTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA 63629 | | || || || |||| || ||||| || || | ||| |||||| |||| | Sbjct 295285 TAAGGGCACA-AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAA 295227 Query 63630 AGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAA 63689 | || ||||| | |||||| || | ||| || ||||| || || || ||||| Sbjct 295226 ACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAG 295167 Query 63690 GCGTGCGTAAACCATTTTTC-AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 || || |||| ||| | | |||| || || || | ||| ||| || || || Sbjct 295166 GCATGAATAAA-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTC 295108 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 | | || || |||| |||||||| |||||||| || |||||||| |||| Sbjct 295107 ACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTCGGCAAT 295051 >seq9 Length=695587 Score = 214 bits (236), Expect = 2e-50 Identities = 588/882 (67%), Gaps = 23/882 (3%) Strand=Plus/Minus Query 33308 ACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT----TCCATGAAATCAA 33363 || || ||| ||||| ||||| || ||||| ||| | || | | ||| |||| | Sbjct 333185 ACTTTCTTCTCAAAAA--AGTTTGTCTTTCCACTGACAGATATGATATTCATCCAATCGA 333128 Query 33364 ACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA---TCTATCTG 33420 | ||||| | || ||||| |||| | |||| ||| ||||| ||| |||||| | Sbjct 333127 ATGGATTTGATGAGTTATAAATCTTTTCATATCC-AAT--AGAAACCAACAATCTATCAG 333071 Query 33421 CGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAA 33480 | || | ||| |||||| || ||| | | || ||||||||| || | | |||||| | Sbjct 333070 CAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAAATCAACTGGTA 333011 Query 33481 GAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA-TAAATCTAACG 33539 | || | | |||||| | ||||| || || | | || | ||| ||| Sbjct 333010 AACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAGTGAATG-AACT 332952 Query 33540 GTTTCTTCACTCGGTGGA-TGTAATA-AATGTTTAA-ACATCAAACATGCGAAATCGCAG 33596 || || | | | |||| | ||||| || | | |||||||||||||| Sbjct 332951 ACTTGTTGAGGTAATTTAGTGTATTTCAATGTGGAATAGAGTAAACATGCGAAATCTGTA 332892 Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || | || || || | | || ||||| ||||| || | | || ||||| || ||| Sbjct 332891 TGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCA 332832 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 || || || | ||| || || ||| || ||| || ||||| ||||| || || Sbjct 332831 CGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACAT 332772 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33775 ||||| || | | ||| || || | | | | | || ||||| || ||||| Sbjct 332771 GCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGA-ATTAATCCATTTCAATGCCCA 332713 Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33835 | || ||||||| || | || | || || ||||||| ||| ||| ||| |||| Sbjct 332712 GTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTC 332653 Query 33836 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895 | ||||||| ||| || || | | |||||||||||| | |||||| ||||| Sbjct 332652 TCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTC 332593 Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTGTACAAA 33954 |||||| || |||||||| ||||||||||| || || |||| | || |||| || | Sbjct 332592 AATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTGCCATGA 332534 Query 33955 ATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACAT 34014 || ||| || ||||||||| || |||||||||||||||||||| || |||| || | Sbjct 332533 ATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCAC-T 332475 Query 34015 GTTTT-ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 34073 || || || |||| || ||| | | | ||||| | ||| ||| | ||||| | Sbjct 332474 GTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTTATATCAGTGTGA 332415 Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | ||| || Sbjct 332414 AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATT 332355 Query 34134 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 | | |||| || | ||| || | |||||| | || |||||| Sbjct 332354 TTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 332313 >seq231 Length=8293 Score = 196 bits (216), Expect = 6e-45 Identities = 293/408 (72%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| | || ||||||| || | || | || || ||||||| ||| ||| ||| Sbjct 1288 GCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTT 1229 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 |||| | ||||||| ||| || || | | |||||||||||| | |||||| Sbjct 1228 CTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATA 1169 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTGT 33949 ||||||||||| || |||||||| ||||||||||| || || |||| | || |||| || Sbjct 1168 TTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTGC 1110 Query 33950 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 ||| ||| || ||||||||| || |||||||||||||| ||||| || |||| Sbjct 1109 CATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAG 1050 Query 34010 TACATGTTTT-ATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCT 34067 || ||| || || |||| || ||| | | | ||| ||||| | ||| ||| | ||||| Sbjct 1049 CAC-TGTCTTGATGAAATGTTGTTCAT-TAGAGTTGAGTTTTTCCCATTCAGTTATATCA 992 Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 | | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | | Sbjct 991 GTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCC 932 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || || | | |||| || | ||| || | |||||| | || |||||| Sbjct 931 CACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 884 >seq62 Length=286411 Score = 187 bits (206), Expect = 3e-42 Identities = 385/563 (68%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 |||||||| || || || | | || ||||| || ||||| || || | |||||| ||| Sbjct 259982 ATTAATTCATTGGAGAATGCCAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATG 260041 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC-AATAAGTCTCTC 33736 ||| ||| || || || ||||| || ||||| || ||||||||| ||||| | || Sbjct 260042 GAACAGAAAGAACCAGAGAAGAAAATACCTTCAACACAAGCAAAGGCCAATAAACGT-TC 260100 Query 33737 TCCATA-ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 33795 || | | | | | || ||||| || ||||||| |||||||||| |||| Sbjct 260101 GGCAAATAAATTCTCATTATTG-ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAG 260159 Query 33796 AAGGCATCGTTTCTATGGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACAT 33852 | || | || || |||||||| || | ||| || ||| || || | ||||| || Sbjct 260160 ATGGAACAGTATCAATGGCATTGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCA- 260216 Query 33853 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33912 |||| || || | |||||||||||| | ||| || |||||||| || || || || | Sbjct 260217 AAGTTTCAATGAGTGTACTATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAAC 260276 Query 33913 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTT 33972 ||||||||||||| || || | || || || || | |||| ||| ||||||| Sbjct 260277 CGTAGAAACATCTCGCTTCTGGTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTT 260336 Query 33973 CATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 34032 |||| || || || || || ||||| || || || ||| || ||||| | || || Sbjct 260337 CATTGACAATACCGTCGGACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTT 260396 Query 34033 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 34092 ||| |||||| | | |||| | | ||||| | | ||| |||||||| | | Sbjct 260397 CGTTTGGTGTCAAGGTGGTCCATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAG 260456 Query 34093 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 34152 |||| || |||||| ||||| |||||||| | ||| || | |||||| || |||| Sbjct 260457 TCCAGAAGGATGCCATGGCCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGA 260516 Query 34153 AAATAACAAATCTATTTGGATTT 34175 | | ||||| | | ||||||| Sbjct 260517 ATAAGACAAAACGGTGTGGATTT 260539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811427787520