Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq38 250 2e-61 seq9 214 2e-50 seq62 172 5e-38 seq231 150 2e-31 >seq38 Length=381539 Score = 250 bits (276), Expect = 2e-61 Identities = 753/1140 (66%), Gaps = 32/1140 (3%) Strand=Plus/Minus Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG 37488 || ||| | || || ||||| || |||| | || | |||| |||||||| || ||| Sbjct 296183 GCAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCG 296124 Query 37489 AATGCATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 |||| | || | || | || || |||| |||||||| |||||||||| ||| || || Sbjct 296123 AATGGA-AGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGG 296065 Query 37548 TCTATGTTTCTTATTAGA--TCTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 ||| ||| | ||| ||| | | |||| ||||| |||||||| |||| || Sbjct 296064 TCTGTGTCTAAAGTTACTCTTCTTGGC--TTCTTCGACTGGGTAATAATTCTTATCAATA 296007 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAA--TTATTCTCAACTTGTCG--AACAT 37661 || ||||| | ||| | || | | | | | | | || | | ||||| | | | ||| Sbjct 296006 ATCTTATTCAAATTGT-AAGTGGCAATCTTGACAACTTCGTAT-AACTTTTGGTGATCAT 295949 Query 37662 AAATACG---TTATT-ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAG 37717 | | | || || ||| ||| | || | | |||| | || |||||||||| Sbjct 295948 AGGTTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAG 295889 Query 37718 CAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTG 37777 |||||||||| | |||||| ||||| || ||||| | ||| || | || | Sbjct 295888 CAACTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGG 295829 Query 37778 TTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCG 37837 | || | || ||||||||||||| ||||||||||||| || || | || || || Sbjct 295828 TACCAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGA 295769 Query 37838 TTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG---CTTTAACGA 37894 || ||| ||||| || || ||||||| ||| | |||||| ||| | | Sbjct 295768 CACCAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAG--TTCTTGAGCCTTGATGGT 295711 Query 37895 TCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCC 37954 || ||| ||| | | | |||| |||| ||||||||| || || || | |||| Sbjct 295710 TCTCTTGGCCTTTCCT-TCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCC 295652 Query 37955 ATACATC-GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013 | ||||| ||| | ||| || ||| |||||| | || |||||||| |||| | Sbjct 295651 AAACATCAGCAAGA-CCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCC 295593 Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTA 38073 | || |||| ||| || | ||| |||||||| | ||||||||| | | ||| Sbjct 295592 TTAACACGTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTG 295533 Query 38074 TATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCAT 38133 |||||| || || ||||||||| || | ||| || || || |||| |||||| Sbjct 295532 ATTTCTTCCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAA 295473 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 ||||| | |||||| | | || || ||| ||| |||| || |||| | |||||| Sbjct 295472 GGTTCCAAATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTG 295413 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 | |||| ||| | | ||| ||||| || | || |||||| ||| | |||||| |||| Sbjct 295412 GCAGTGTCATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCT 295353 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 || || | || ||||| ||||| | ||||| || || ||||| ||| Sbjct 295352 CTAATGTATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGAC 295293 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACG-TATCAAATATACCTTCTATACTGTCATCCTT 38372 || || || | || || || |||| | ||||| | ||||| | || |||||||| Sbjct 295292 TTGGAAATAAGGGCACAA-GTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTT 295234 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432 || | | | |||||| | |||||| || | |||||| || || || || ||||| Sbjct 295233 CATAGAAACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGT 295174 Query 38433 AGGAGATGCATGTATGAACCATTT---TTCCGACAAATAATTATATGTTTCTATTACATC 38489 ||||| ||||| || ||| || | | || || || ||| |||| || | Sbjct 295173 TGGAGAGGCATGAATAAAC-ATACCACTACTGAGTAA--ATCATAGGTTTGAATGGCTCT 295117 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || ||||| ||||| ||||||| | ||| | ||| | ||| |||||||||||||| Sbjct 295116 TTCAATGTCACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 214 bits (236), Expect = 2e-50 Identities = 516/766 (67%), Gaps = 19/766 (2%) Strand=Plus/Minus Query 11456 AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATA 11515 || |||||||| || || | ||| ||||| || |||||| | || |||||| || || Sbjct 333083 AACAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATC 333024 Query 11516 AGATCCACCGGAATAGCAACTGTCAA----AAACTCCTTTTCTATATTAACCGCATCAAT 11571 | ||| || || | |||| ||| ||| ||||| || || | ||| || ||| Sbjct 333023 AAATCAACTGGTA----AACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATA 332968 Query 11572 GATTATCGACGTTATAACTTCCTTAGATGGTGGA-TGTAATA-AATGTTTAA-ACATTAA 11628 | | || | |||| | || | | | |||| | ||||| || | | ||| Sbjct 332967 AACAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTATTTCAATGTGGAATAGAGTAA 332908 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || ||||| |||||| ||||| || | | ||| | ||||||||| |||| ||| Sbjct 332907 ACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAA 332848 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||||| || ||||| |||| ||| || || | | ||| ||||| ||||| Sbjct 332847 ACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAA 332788 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATAT 11808 |||||||||||| ||||||||| | | |||||| || | | || | | || Sbjct 332787 AATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGAATTAAT 332728 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||||| ||||| | ||||||||||| || || | ||| || || || | ||| Sbjct 332727 CCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAA 332668 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTA-CATATGTATCTATTAATAAACTATACATTT 11927 || | | || ||||| | | ||| | | || | || || || | ||||||||||| Sbjct 332667 TAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTT 332609 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987 | | |||||||||||| || || |||||||||||||||||||||| ||| |||| | Sbjct 332608 CAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTT 332549 Query 11988 GTACAT-CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 | || | ||| || | || | || ||| ||||| ||||| |||||||| | |||| Sbjct 332548 GAACTTGTGCCATGAATTGTTGAC-ATAGATTTTCATTGACAATTCCATCACTGGCTGCA 332490 Query 12047 AAAAATGCTAGTATATGT-TTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 || || || || | ||| || || || | || ||| | | | | ||| ||||| || Sbjct 332489 AAGAAGGCCAGCA-CTGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTC 332431 Query 12106 ATCTAAATC-TTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 | || ||| | ||| | ||| || || || || ||||| || |||| || | || Sbjct 332430 AGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTT 332372 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | ||||||| ||| || | | |||| | || || || | ||| || Sbjct 332371 TGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAA 332326 >seq62 Length=286411 Score = 172 bits (190), Expect = 5e-38 Identities = 498/754 (66%), Gaps = 23/754 (3%) Strand=Plus/Plus Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 |||||| || || | ||| || || || |||||||| | | |||||||| || | ||| Sbjct 259774 TCTATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAATC 259833 Query 11521 CACCGGAATAGCAACTGTCAAAAAC----TCCTTTTCTATATTAACCGCATCAATGATTA 11576 || || | |||| ||| ||| |||||||| || | ||| || ||| | || Sbjct 259834 TACTGGCA----AACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTA 259889 Query 11577 TCGACGTTATAACTTCCTTAG--ATGGTGGATGTAA---TAAATGTTTAA-ACATTAAAC 11630 || | ||||| | | | ||| ||| | ||||| || | | ||||| Sbjct 259890 GTGAGTGAACAACTTGTTGCGGCAATTTGG---TAAACTTCAATGTGGAATATAATAAAC 259946 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||||||| ||||| ||||| || | |||| |||||| || |||| || | Sbjct 259947 AGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAAC 260006 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 | ||||| | || ||||| || | |||||| || | | || |||||||| ||||| | Sbjct 260007 CAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAA 260066 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCC 11810 | || || ||| ||||| || | || | ||| || ||| || | || |||| Sbjct 260067 TACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTATTGATCC 260126 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | |||||| || ||||||| ||| || | || || || || || || | Sbjct 260127 ATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAACA 260186 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 || | | ||||| | | ||| ||| | || || || | | |||||||||||| | Sbjct 260187 AACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTCAG 260246 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 ||| |||||||| ||||| ||||| || || |||||||||| || |||| |||| Sbjct 260247 CATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTTGTA 260306 Query 11991 CATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | || |||||| | || | | ||||| ||||| |||||||| || | ||||| Sbjct 260307 CCTCAGCCATAAATTGTTGGCAC-AAATTTTCATTGACAATACCGTCGGACGCAGCAAAG 260365 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 || |||| | | || ||||||| || ||||| | || || | || || | | Sbjct 260366 AAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCC-ATTGTGT 260424 Query 12110 AA-ATC-TTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 || ||| | ||| | ||| ||||||||| | ||||| || ||||| | | |||| Sbjct 260425 AATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTAT 260483 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 |||||| ||| || | |||| | | |||||| Sbjct 260484 ACATTTCCCAAATCTTTGGATATTCGAGAGGGAA 260517 >seq231 Length=8293 Score = 150 bits (166), Expect = 2e-31 Identities = 328/478 (69%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 11738 CCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG 11797 ||||| ||||| |||||||||||| ||||||||| | | |||||| || | | || Sbjct 1369 CCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTC 1310 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 | | |||||||| ||||| | ||||||||||| || || | ||| || Sbjct 1309 TCAGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCA 1250 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTA-CATATGTATCTATTAATAA 11916 || || | ||||| | | || ||||| | | ||| | | || | || || || | Sbjct 1249 ATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGT 1191 Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 |||||||||||| | |||||||||||| || || |||||||||||||||||||||| ||| Sbjct 1190 ACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGC 1131 Query 11977 CTCTGAACACTGTACAT-CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCAT 12035 |||| || || | ||| || | || | || ||| ||||| ||||| |||| Sbjct 1130 TTCTGGTACTTGAACTTGTGCCATGAATTGTTGAC-ATAGATTTTCATTGACAATTCCAT 1072 Query 12036 CACTAGATGCAAAAAATGCTAGTATATGT-TTTATAAAGTATTTTTCGTCTTTAGTT-AA 12093 |||| | ||||| || || || | ||| || || || | || ||| | | |||| | Sbjct 1071 CACTGGCCGCAAAGAAGGCCAGCA-CTGTCTTGATGAAATGTTGTTCAT-TAGAGTTGAG 1014 Query 12094 TTTATCCCAATCATCTAAATC-TTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTG 12152 ||| ||||| ||| || ||| | ||| | ||| || || || || ||||| || | Sbjct 1013 TTTTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAG 955 Query 12153 CCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 ||| || | ||| ||||||| ||| || | | |||| | || || || | ||| || Sbjct 954 CCATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAA 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520208456960