Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 255 8e-63 seq38 239 6e-58 seq231 210 3e-49 seq62 192 8e-44 >seq9 Length=695587 Score = 255 bits (282), Expect = 8e-63 Identities = 585/862 (68%), Gaps = 29/862 (3%) Strand=Plus/Minus Query 35918 GATATATTTTCCATGAAATCGAATGGATT-GATAACATTATAAAtttttttAAATCCCAA 35976 ||||| | | ||| ||||||||||||| ||| | |||||||| |||| | |||| || Sbjct 333149 GATATGATATTCATCCAATCGAATGGATTTGATGAG-TTATAAATCTTTTCATATCC-AA 333092 Query 35977 TTCAGAAATCAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033 | ||||| ||| |||||| || || | ||| |||||| || ||| | | || ||| Sbjct 333091 T--AGAAACCAACAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATT 333034 Query 36034 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 |||||| || | | |||||| | | || | | |||||| | ||||| || || Sbjct 333033 CATTCCAATCAAATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGC 332974 Query 36094 GTCTGTTATAATAGATATTACTGTTTCTTCAC-----TCGGTGGATACAATAAATGTTTA 36148 || | || || ||| || || | | ||| || | ||||| | Sbjct 332973 TTCATAAACAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTATT---TCAATGTGGA 332917 Query 36149 A-ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 | | | |||||||||||||| |||| || || || | | || ||||| || || Sbjct 332916 ATAGAGTAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGA 332857 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 36267 || | | || ||||| || ||||| || || | ||| || || || ||| ||| Sbjct 332856 GAATGATAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCC 332797 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 36327 ||| ||||||||||| || || ||||| || | | ||| || || ||| | | Sbjct 332796 AGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCA-AACAA--ATT 332740 Query 36328 GTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 ||| | ||||| || ||||| | || ||||||| || | || | ||| || Sbjct 332739 CTCAGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATC 332680 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAA-CATATGTATCAATCAAAA 36443 || |||| ||| ||| ||| |||| | ||||||| || | || ||||| | | Sbjct 332679 AATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAG 332621 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 |||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||| | Sbjct 332620 TACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTG 332561 Query 36504 CCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 | || |||| | || |||| || ||| ||| || ||||||||| || ||||| Sbjct 332560 CTTCTGGTACT-TGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCA 332502 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTT-ATAAAATATTTTTCGTTTGGTGTTAG 36621 |||||||||||||| || |||| || ||| || || |||| || ||| || | | || Sbjct 332501 TCACTGGCTGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAG 332443 Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681 ||| | ||| ||| | ||||| | | ||| || || ||||||||||| ||||| || Sbjct 332442 TTTTTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGC 332383 Query 36682 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 | || |||||| ||||| | ||| || | | |||| |||| |||||| | |||||| | Sbjct 332382 CATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACG 332323 Query 36742 ATTTTGATTTTTTGCAAGGATT 36763 || |||||| | |||||| Sbjct 332322 ATGAGGATTTTCTTTGAGGATT 332301 >seq38 Length=381539 Score = 239 bits (264), Expect = 6e-58 Identities = 775/1191 (65%), Gaps = 18/1191 (2%) Strand=Plus/Minus Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG- 65472 |||| |||| || || |||| |||||| || ||| ||||| || || | ||| Sbjct 296241 TCCTTCATAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGG 296183 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 || | | ||||||||||| ||||| | | | || || | || ||||| || || | Sbjct 296182 CAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGA 296123 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 ||||| | | || || || || || || ||||||||||| | ||| || |||| Sbjct 296122 ATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTC 296063 Query 65593 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 65652 | ||||| ||| | | |||||| | || |||||||| |||| ||||| | Sbjct 296062 TGTGTCTAAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCT 296003 Query 65653 TATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 65709 |||| | ||| || |||| ||||| || || | | || | |||| | Sbjct 296002 TATTCAAATTGTAAGTGGCAATC---TTGACAACTTCGTATAACTTTTGGTGATCATAGG 295946 Query 65710 GCTCA---TCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 65763 | | ||| ||| ||| || | | |||| | || || ||||| || || | Sbjct 295945 TTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAA 295886 Query 65764 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 65823 | |||| || | | | | ||| || || ||||| || | ||| | |||||||||| | Sbjct 295885 CTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTAC 295826 Query 65824 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 65883 | | ||||||||||| ||| | ||||| | |||||| || | ||| |||| || Sbjct 295825 CAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACAC 295766 Query 65884 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 65943 |||||||||| || | ||| ||||| || ||||| || ||||||| || | | Sbjct 295765 CAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCT 295706 Query 65944 TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 66003 || | ||||||||| ||| ||||| ||| | | ||| || || |||||||||| Sbjct 295705 TGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACAT 295646 Query 66004 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 66063 | | || || ||||| ||||| | | ||||| || | |||||||| || | Sbjct 295645 CAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACAC 295586 Query 66064 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCT 66123 ||| ||| |||||||| | ||| | | | | ||||||||||| | ||| ||| | Sbjct 295585 GTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTT 295526 Query 66124 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCA 66183 | || || ||||||| | | ||| | || | | ||| ||| | ||||| ||||||| Sbjct 295525 CCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCA 295466 Query 66184 AGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 66243 | || ||||| | | || | || || || ||||| | ||||| || |||| Sbjct 295465 AATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGT 295406 Query 66244 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 66303 ||| ||||||||||||||||||| | |||||| ||||| || || || || || | Sbjct 295405 CATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGT 295346 Query 66304 AGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 66363 | |||| || | |||||| || ||| | ||| || || || || || || | Sbjct 295345 ATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAA 295286 Query 66364 TTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 | | || || || |||| |||||||| || || | || ||||||| |||| | Sbjct 295285 TAAGGGCACA-AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAA 295227 Query 66423 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 66482 | || ||||| | |||||| || ||| || ||||| || || || ||||| Sbjct 295226 ACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAG 295167 Query 66483 GCGTGCGTAAACCATTTTTC-AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 66541 || || |||| ||| | | |||| || || || | ||| ||| || || || Sbjct 295166 GCATGAATAAA-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTC 295108 Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 | | || || |||| |||||||| |||||||| || |||||||| Sbjct 295107 ACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq231 Length=8293 Score = 210 bits (232), Expect = 3e-49 Identities = 356/505 (70%), Gaps = 12/505 (2%) Strand=Plus/Minus Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 |||||| ||||||||||| || || ||||| || | | ||| || || ||| Sbjct 1370 TCCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCA-AACAA-- 1314 Query 36325 ACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | | ||| | ||||| || ||||| | || ||||||| || | || | ||| Sbjct 1313 ATTCTCAGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGT 1254 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAA-CATATGTATCAATCA 36440 || || |||| ||| ||| ||| |||| | ||||||| || | || ||||| | Sbjct 1253 ATCAATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGA 1195 Query 36441 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 36500 | |||||||||||| | |||||| ||||||||||| ||||||||||| |||||||||| Sbjct 1194 GAGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATC 1135 Query 36501 TAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | || || |||| | || |||| || ||| ||| || ||||||||| || ||| Sbjct 1134 TTGCTTCTGGTACT-TGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATT 1076 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT-ATAAAATATTTTTCGTTTGGTGT 36618 || |||||||| ||||| || |||| || ||| || || |||| || ||| || | | Sbjct 1075 CCATCACTGGCCGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAGTT 1017 Query 36619 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 ||||| | ||| ||| | ||||| | | ||| || || ||||||||||| ||||| Sbjct 1016 GAGTTTTTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGA 957 Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||| || |||||| ||||| | ||| || | | |||| |||| |||||| | |||||| Sbjct 956 AGCCATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAA 897 Query 36739 TCTATTTTGATTTTTTGCAAGGATT 36763 | || |||||| | |||||| Sbjct 896 ACGATGAGGATTTTCTTTGAGGATT 872 >seq62 Length=286411 Score = 192 bits (212), Expect = 8e-44 Identities = 412/607 (68%), Gaps = 18/607 (3%) Strand=Plus/Plus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 ||||| || ||||| ||||| || || || | |||||||| ||||| || | Sbjct 259943 AAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCC 260002 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 | || ||||| || ||||| || || | |||||| ||||| || || ||||| ||| Sbjct 260003 AAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAG 260062 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGC-AATAAGTCTCTCTCCA--TAACCGGCACTGTCA 36331 ||||| ||||| || |||||||| ||||| | || || ||| | | ||| Sbjct 260063 AAAATACCTTCAACACAAGCAAAGGCCAATAAACGT-TCGGCAAATAA-----ATTCTCA 260116 Query 36332 TGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | ||||| || ||||||| |||||||||| |||| | || | || || || Sbjct 260117 TTATTGATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATG 260176 Query 36389 GCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 ||||| || | ||| || ||| || || | ||||| || | || ||||| | | Sbjct 260177 GCATTGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCAAA-GTTTCAATGAGTGTA 260233 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||||||||| | ||| || |||||||| || ||||| || |||||||||||||| || Sbjct 260234 CTATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCT 260293 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | || ||||| || | |||| ||| ||||||||||| || || ||||| Sbjct 260294 TCTGGTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCG 260353 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 || ||||| || || || ||| || ||||| | || |||||||||||| | | Sbjct 260354 GACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTG 260413 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 |||| | | ||||| | | ||| |||||||| | ||||| || |||||| Sbjct 260414 GTCCATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG 260473 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 36745 ||||| |||||||| | ||| || | |||||| | || || | ||||| | | | Sbjct 260474 GCCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGT 260533 Query 36746 TGATTTT 36752 |||||| Sbjct 260534 GGATTTT 260540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166349906560