Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq62 109 4e-19 >seq62 Length=286411 Score = 109 bits (120), Expect = 4e-19 Identities = 246/365 (67%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 22537 ATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAA 22596 || |||||||| ||| |||||| || || || | || || |||||||| ||||||||| Sbjct 260301 ATACCAGAAGCGAGATGTTTCTACGGTTTCCAAATTGCTATTGAAAATATCCATGCTGAA 260242 Query 22597 ATGTATACTCAGCTGATTATCACATTAGTA---GCT-AAAGAGAATCAAGCCGCATTGTT 22652 ||||||| | || ||| || || || | | |||||||| | ||| ||| Sbjct 260241 ATGTATAGTACACTCATTGAAACTTTGATAAAGGATCAAAGAGAAAGA-----CATCGTT 260187 Query 22653 T--TCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGCTGCACAAT 22708 | ||| || ||| | | |||| ||| || ||||||| |||||| ||| Sbjct 260186 TGTTCAATGCCATTGATACTGTTCCATCTGTACAAAAGAAGGCACGTTGGGCTATGAAAT 260127 Query 22709 GGCTGAATGCCACACATAAGTCTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAG 22768 || | ||| | | || | | || |||| | ||||||||||| |||||||| Sbjct 260126 GGATCAAT---AATGAGAATTTATTTGCCGAACGTTTATTGGCCTTTGCTTGTGTTGAAG 260070 Query 22769 GCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGC 22828 | | | || ||||| || || |||| || ||| ||||||||||| ||||||| Sbjct 260069 GTATTTTCTTCTCTGGTTCTTTCTGTTCCATTTTTTGGTTGAAGAAACGTGGTCTCATGC 260010 Query 22829 CAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTG 22888 | || ||||| || ||||| || || || |||||| ||||| ||||| ||| |||| Sbjct 260009 CTGGTTTGGCATTCTCCAATGAATTAATCTCCCGTGATGAAGGATTACACACTGATTTTG 259950 Query 22889 CTTGT 22893 | ||| Sbjct 259949 CCTGT 259945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356230196187952