Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 260 2e-64 seq9 224 1e-53 seq231 201 2e-46 seq62 187 4e-42 >seq38 Length=381539 Score = 260 bits (288), Expect = 2e-64 Identities = 737/1121 (66%), Gaps = 12/1121 (1%) Strand=Plus/Minus Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || || | | | ||||| | || |||||| || || |||||| | Sbjct 296174 TAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGAATGGAAGA 296115 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | || || || || || || ||||||||||| | ||| || ||||| ||||| Sbjct 296114 CGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTA 296055 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 ||| | | |||||| | || |||||||| |||| ||||| ||||| | | Sbjct 296054 AAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAA 295995 Query 79540 TTCCTGACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA---TC 79595 || | | | | | ||||| || || | || || | |||| | | | || Sbjct 295994 TTG-TAAGTGGCAATCTTGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTC 295936 Query 79596 T--ATT-ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGC 79652 | ||| ||| || | | || | | || || ||||| || || || |||| || Sbjct 295935 TTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGG 295876 Query 79653 ATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTG 79712 | | | | ||| || |||||||| || | |||| | |||| ||||| || | ||||| Sbjct 295875 AGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTG 295816 Query 79713 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAAT 79772 |||||| ||| | ||||| | |||||| || | ||| | || |||||||||||| Sbjct 295815 TTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAAT 295756 Query 79773 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT 79832 || | ||| ||||| || ||||| || ||||||| || | |||| | Sbjct 295755 TTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCTTGGCCTTTCC 295696 Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||||||||| |||| ||||||||| | | ||| || || ||||||||||| | | || Sbjct 295695 TTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACC 295636 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 || ||| | ||||| | | ||||| || |||||||||| || |||| ||| || Sbjct 295635 TTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAA 295576 Query 79953 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 |||||| | ||| | | | | |||| |||||| | ||| || || || || Sbjct 295575 GAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTG 295516 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 ||||||| | | ||| | || | | ||| ||||| ||||| |||||||| || ||||| Sbjct 295515 ATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGC 295456 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | ||| || || || || ||||| | ||||| || |||| ||| |||| Sbjct 295455 AAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAAC 295396 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 ||||||||||||||| | |||||| ||||| || || || || || || |||| Sbjct 295395 TCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGA 295336 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 || | |||||| || ||| | ||| || || || || || || || | || || Sbjct 295335 AGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACA 295276 Query 80253 TCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 || |||| |||||||| || || | ||| |||||| |||| || || |||| Sbjct 295275 -AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAAC 295217 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | | |||||| || ||| || ||||| || || || ||||| || || ||| Sbjct 295216 AAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAA 295157 Query 80372 ACCATTTTTC-AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 | ||| | | |||| || || || | ||| ||| ||| || || | | || Sbjct 295156 A-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTGG 295098 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || |||| |||||||| |||||||| || |||||||| Sbjct 295097 ATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 224 bits (248), Expect = 1e-53 Identities = 591/885 (67%), Gaps = 29/885 (3%) Strand=Plus/Minus Query 49686 ACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT----TCCATGAAATCAA 49741 || || ||| ||||| ||||| || ||||| ||| | || | | ||| |||| | Sbjct 333185 ACTTTCTTCTCAAAAA--AGTTTGTCTTTCCACTGACAGATATGATATTCATCCAATCGA 333128 Query 49742 ACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA---TCTATCCG 49798 | ||||| | |||||||| |||| | |||| ||| ||||| ||| |||||| | Sbjct 333127 ATGGATTTGATGAGTTATAAATCTTTTCATATCC-AAT--AGAAACCAACAATCTATCAG 333071 Query 49799 CGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAA 49858 | || | ||| |||||| || ||| | | || ||||||||| || | | |||||| | Sbjct 333070 CAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAAATCAACTGGTA 333011 Query 49859 GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGG 49918 | || | | |||||| | ||||| || || || | || || ||| Sbjct 333010 AACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAGTGAATGAACTA 332951 Query 49919 TTTCTTCAC-----TCGGTGGATGCAATAAATGTTTAA-ACATCAAACATGCGAAATCGC 49972 || || | | ||| || | ||||| || | | |||||||||||||| Sbjct 332950 CTTGTTGAGGTAATTTAGTGTATT---TCAATGTGGAATAGAGTAAACATGCGAAATCTG 332894 Query 49973 AGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 50032 || | || || || | | || | ||| || || || | | || ||||| || | Sbjct 332893 TATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGAC 332834 Query 50033 CACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||| || || | ||| || || || ||| ||||| ||||| ||||| || || Sbjct 332833 CACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACAC 332774 Query 50093 CGGCAAAGGC-AACAAGTCTCTCTCCATA-ACTGGCGCTGTCATGTATCCACTTTTGAGC 50150 ||||| || ||||| ||| || || | | | | | || ||||| || || Sbjct 332773 ATGCAAATGCCAACAA-TCTTTCAGCAAACAAATTCTCAGA-ATTAATCCATTTCAATGC 332716 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| | || ||||||| || | || | || || ||||||| ||| ||| ||| | Sbjct 332715 CCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCT 332656 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 ||| | ||||||| ||| || || | | |||||||||||| | |||||| || Sbjct 332655 TTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATT 332596 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTGTAC 50329 ||||||||| || |||||||| ||||||||||| || || |||| | || |||| || Sbjct 332595 TTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTGCCA 332537 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||| ||| | || ||||||||| || ||||| |||||||||||||| || |||| | Sbjct 332536 TGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCA 332477 Query 50390 CATGTTTT-ATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 | ||| || || ||||||| ||| || | | ||||| | ||| ||| | ||||| | Sbjct 332476 C-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTTATATCAGTG 332418 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 50508 | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | ||| Sbjct 332417 TGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCAC 332358 Query 50509 ATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || | | |||| || | ||| || | |||||| | || |||||| Sbjct 332357 ATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 332313 >seq231 Length=8293 Score = 201 bits (222), Expect = 2e-46 Identities = 292/407 (72%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 50149 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 50208 ||||| | || ||||||| || | || | || || ||||||| ||| ||| ||| Sbjct 1288 GCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTT 1229 Query 50209 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 |||| | ||||||| ||| || || | | |||||||||||| | |||||| Sbjct 1228 CTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATA 1169 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTGT 50327 ||||||||||| || |||||||| ||||||||||| || || |||| | || |||| || Sbjct 1168 TTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTGC 1110 Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 ||| ||| | || ||||||||| || ||||| |||||||| ||||| || |||| Sbjct 1109 CATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAG 1050 Query 50388 TACATGTTTT-ATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 || ||| || || ||||||| ||| || | | ||||| | ||| ||| | ||||| Sbjct 1049 CAC-TGTCTTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAG 991 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | || Sbjct 990 TGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCC 931 Query 50507 AGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 | || | | |||| || | ||| || | |||||| | || |||||| Sbjct 930 ACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 884 >seq62 Length=286411 Score = 187 bits (206), Expect = 4e-42 Identities = 384/563 (68%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 |||| ||| ||||| || | | || ||||| || ||||| || || | |||||| ||| Sbjct 259982 ATTAATTCATTGGAGAATGCCAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATG 260041 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || || || ||||| ||||| || ||||| || |||||||| | | | || Sbjct 260042 GAACAGAAAGAACCAGAGAAGAAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCG 260101 Query 50116 CCA--TAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 50173 || ||| | | | | || ||||| || ||||||| |||||||||| |||| Sbjct 260102 GCAAATAAATT-CTCATTATTG-ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAG 260159 Query 50174 AAGGCATCGTTTCTATGGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACAT 50230 | || | || || |||||||| || | ||| || ||| || || | ||||| || Sbjct 260160 ATGGAACAGTATCAATGGCATTGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCA- 260216 Query 50231 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 50290 |||| || || | |||||||||||| | ||| || |||||||| || || || || | Sbjct 260217 AAGTTTCAATGAGTGTACTATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAAC 260276 Query 50291 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTT 50350 ||||||||||||| || || | || || || || | |||| ||| ||||||| Sbjct 260277 CGTAGAAACATCTCGCTTCTGGTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTT 260336 Query 50351 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTT 50410 |||| || || ||||| || ||||| || || || ||| || ||||| |||| || Sbjct 260337 CATTGACAATACCGTCGGACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTT 260396 Query 50411 CGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 50470 |||| ||||| | | |||| | | ||||| | | ||| |||||||| | | Sbjct 260397 CGTTTGGTGTCAAGGTGGTCCATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAG 260456 Query 50471 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 50530 |||| || |||||| ||||| |||||||| | ||| || | |||||| || |||| Sbjct 260457 TCCAGAAGGATGCCATGGCCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGA 260516 Query 50531 AAATAACAAATCTATTTGGATTT 50553 | | ||||| | | ||||||| Sbjct 260517 ATAAGACAAAACGGTGTGGATTT 260539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261760965760