Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9 192 6e-44 seq62 165 8e-36 seq231 132 5e-26 >seq9 Length=695587 Score = 192 bits (212), Expect = 6e-44 Identities = 599/915 (65%), Gaps = 22/915 (2%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT- 13582 ||||||||| |||| ||| ||||| ||||| | || || || || | |||| Sbjct 333257 TAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTGGACATTAT----ATTTGC 333202 Query 13583 -TTG--ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||| | |||| | || ||||| ||||| || || || | ||||| | Sbjct 333201 CTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGAT 333142 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 | ||| |||| ||||||||| ||| || | | || ||| | || | | | Sbjct 333141 ATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCCAATAGAAACCAA 333082 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||||||||||||| | ||||||||||| |||||| || |||||| || || | Sbjct 333081 CAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAA 333022 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA- 13818 | || || | | | | | |||||| || || || ||||| || | | || Sbjct 333021 ATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAG 332962 Query 13819 TAATTGTAATAATCTCATTAG---AAGGAGGATATTTTAGATGTTTAAAA-ATTAAACAC 13874 | | || | || | | | || | || ||||| | |||| || | | |||||| Sbjct 332961 TGAATGAACTACT-TGTTGAGGTAATTTAGTGTATTTCA-ATGTGGAATAGAGTAAACAT 332904 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 || ||||| ||| | || ||||| | | || | ||| || || |||| ||| || Sbjct 332903 GCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCA 332844 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||||| || ||||| |||||||| || |||| | ||| || || ||||| ||| Sbjct 332843 GGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATT 332784 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 ||||| || ||||| || | |||| ||| ||||| | || | | | ||| Sbjct 332783 CCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAA--TTCTCAGAATTA-ATC 332727 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||||| ||||| | || ||| |||| || | | ||| ||||| |||| |||| Sbjct 332726 CATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAAT 332667 Query 14115 AAATA--TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 | | ||| |||||||| || || ||| || ||||| || |||||||||| Sbjct 332666 AGACGATTTCTTTCTCTTTGGTCTTT--AATCAGAGTTTCAATGAGAGTACTATACATTT 332609 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232 ||| || || ||||| || || || ||||| ||||| || ||||| ||||| | || Sbjct 332608 CAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTT 332549 Query 14233 GTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 | |||| | ||| || | ||||||||| || || |||||||| ||||||| Sbjct 332548 GAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAA 332489 Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14352 | || |||| | | || || || | ||| || | | |||||||||| ||| || | Sbjct 332488 AGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAG 332429 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412 || ||| | |||||| || || || |||||||| || ||| | | ||||| | Sbjct 332428 TTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGT 332369 Query 14413 ACATTACCCATATTT 14427 ||||| |||| |||| Sbjct 332368 ACATTTCCCACATTT 332354 >seq62 Length=286411 Score = 165 bits (182), Expect = 8e-36 Identities = 557/852 (65%), Gaps = 24/852 (3%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||||| |||| | |||||||||||||| || ||||| | || ||| | | ||| Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCACTAACAGAAATAATGTTCAT 259716 Query 13646 AAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 13705 |||| ||||||||| || | | | |||||| |||| || || | | ||| Sbjct 259717 CCAATCGAATGGATTTGGAGAATTGTAAATCTTATCATAACCAAGGGATACCAAAAGTCT 259776 Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 |||||||| | ||||| ||||| ||||||| | | |||||||| || | | ||| Sbjct 259777 ATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAATCTAC 259836 Query 13766 AGGAATTATATTGGTTAAA--AATTCTTTTTCTATAGACACAGCCTCTTTTA-TAATAAT 13822 || | | || ||| ||||| ||||| || ||||| || | || | | Sbjct 259837 TGGCA--AACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTAGTGAG 259894 Query 13823 TGTAATAATCTCATTAG--AAGGAGGATATTTTAGATGTTTAAAA-ATTAAACACGCAAA 13879 || || || | | | || || | || |||| || | | |||||| ||||| Sbjct 259895 TG-AACAACTTGTTGCGGCAATTTGGTAAACTTCAATGTGGAATATAATAAACAGGCAAA 259953 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||| || | || ||||| | || | ||| || || |||| || || ||||| Sbjct 259954 ATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCAGGCAT 260013 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | || ||||| || |||||||| || | | || || || || ||||| || || || Sbjct 260014 GAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATACCTTC 260073 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA-TGCT--TTTTTGTTCGATATCCA 14056 ||| |||||| || | ||| ||||| |||| | | || || ||| ||||| Sbjct 260074 AACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTATTG------ATCCA 260127 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||| ||||||| | || |||| | | | | || ||||| ||||| || || Sbjct 260128 TTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAACAA 260187 Query 14117 AT-AT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | || || |||||||| | ||| | | | || ||||| ||| |||||||||||| Sbjct 260188 ACGATGTCTTTCTCTTTGATCCTTTA--TCAAAGTTTCAATGAGTGTACTATACATTTCA 260245 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 | || || ||||| ||||| || || ||||| || || ||||| ||||| | |||| Sbjct 260246 GCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTTGT 260305 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 || || | |||| || | |||||||||||| || ||||| || || ||||| Sbjct 260306 ACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCAAAG 260365 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGA 14353 || || || | | || ||||||| ||| || || ||| || | |||| | | Sbjct 260366 AAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAG-GTGGTCCATTGTGT 260424 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||| | |||||| ||||| ||| | ||||| || || | || || ||||| Sbjct 260425 AATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTATA 260484 Query 14414 CATTACCCATAT 14425 |||| |||| || Sbjct 260485 CATTTCCCAAAT 260496 >seq231 Length=8293 Score = 132 bits (146), Expect = 5e-26 Identities = 317/475 (67%), Gaps = 7/475 (1%) Strand=Plus/Minus Query 13955 tAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 |||||| || |||| | ||| || || ||||| |||||||| || ||||| || Sbjct 1394 TAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGC 1335 Query 14015 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14074 | |||| ||| ||||| | || | | | |||||||| ||||| | || Sbjct 1334 CAACAATCTTTCAGCAAACAAA--TTCTCAGAATTA-ATCCATTTCAATGCCCAGTTAGC 1278 Query 14075 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA--TTCCTTCTCTTTA 14132 ||| |||| || | | ||| ||||| |||| ||||| | ||| |||||||| Sbjct 1277 TTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTTTG 1218 Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192 || || ||| || ||||| || ||||||||||||| || || ||||| || Sbjct 1217 GTCTTT--AATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATG 1160 Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTT 14252 || || ||||| ||||| || ||||| ||||| | ||| |||| | ||| | Sbjct 1159 GCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGT 1100 Query 14253 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14312 | | ||||||||| || || |||||||| || ||||| || |||| | | || Sbjct 1099 TGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGTCTTG 1040 Query 14313 ATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCT 14372 || || | ||| || | | ||||||||||| ||| || | || ||| | |||||| Sbjct 1039 ATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGATCA 980 Query 14373 ACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTT 14427 || || || |||||||| || ||| | | ||||| |||||| |||| |||| Sbjct 979 ACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATTT 925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723298665600