Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9 215 5e-51 seq62 185 8e-42 seq231 138 1e-27 >seq9 Length=695587 Score = 215 bits (238), Expect = 5e-51 Identities = 645/977 (66%), Gaps = 40/977 (4%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT- 13370 ||||||||| |||| ||| ||||| ||||| | || || || || | |||| Sbjct 333257 TAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTGGACATTAT----ATTTGC 333202 Query 13371 -TTG--ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||| | |||| | || ||||||||||| || || || | ||||| | Sbjct 333201 CTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGAT 333142 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 | ||| ||||||||||||||| ||| || | | || ||| | || | | || Sbjct 333141 ATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCCAATAGAAACCAA 333082 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||||||||||||| | ||||||||||| |||||| || |||||| || || | Sbjct 333081 CAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAA 333022 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | || || | | | | | | |||||| || || || ||||| || | | || Sbjct 333021 ATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAG 332962 Query 13608 --AAT------CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA-ATTAA 13658 ||| ||| | | || ||| || ||||| | |||| || | | ||| Sbjct 332961 TGAATGAACTACTTGTTGAGGTAATTT-----AGTGTATTTCA-ATGTGGAATAGAGTAA 332908 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| || ||||| ||| | || ||||| | | || | ||| || || |||| ||| Sbjct 332907 ACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAA 332848 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||||| || ||||| |||||||| || |||| | || ||| || ||||| Sbjct 332847 ACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAA 332788 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 |||||||| || ||||| || | | || ||| ||||| | || | | | | Sbjct 332787 AATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAA--TTCTCAGAATTA 332730 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||||| ||||| | || ||| |||| || | | ||| || || |||| Sbjct 332729 -ATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATG 332671 Query 13899 GAATAAATG--TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 |||| | | ||| |||||||| || || ||| || ||||| || |||||| Sbjct 332670 AAATAGACGATTTCTTTCTCTTTGGTCTTT--AATCAGAGTTTCAATGAGAGTACTATAC 332613 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||||| || || ||||| || || || ||||| ||||| |||||||| ||||||| Sbjct 332612 ATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGT 332553 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCA-AG-TTTTCATTAACAATACCATCACTAG 14074 ||| || | | | | || || || || |||||||| ||||| |||||||| | Sbjct 332552 ACTTGAACTT--GTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGG 332495 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 ||||||| || |||| | | || || || | ||| || | | |||||||||| || Sbjct 332494 CTGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCC 332435 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 | || | || ||| | |||||| || || || |||||||| || ||| | | | Sbjct 332434 ATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCT 332375 Query 14195 TTTTATACATTACCCATATTTCTTTATATAAT--ATAGGAAAAACTACAAATC-TTGAAG 14251 |||| |||||| |||| ||| || ||||| | ||||| | ||||| | ||| | Sbjct 332374 TTTTGTACATTTCCCACATT--TTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGG 332317 Query 14252 ATGTTTCTTTAAGAATT 14268 || ||||||| || ||| Sbjct 332316 AT-TTTCTTTGAGGATT 332301 >seq62 Length=286411 Score = 185 bits (204), Expect = 8e-42 Identities = 590/901 (65%), Gaps = 17/901 (2%) Strand=Plus/Plus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 |||||||| |||| | |||||||| ||||| || ||||| | || ||| | | ||| Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCACTAACAGAAATAATGTTCAT 259716 Query 13434 AAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCT 13493 ||||||||||||||| || | | | |||||| |||| || || || | ||| Sbjct 259717 CCAATCGAATGGATTTGGAGAATTGTAAATCTTATCATAACCAAGGGATACCAAAAGTCT 259776 Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||||| | ||||| ||||| ||||||| | | |||||||| || | | ||| Sbjct 259777 ATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAATCTAC 259836 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA-TAATAATCT 13612 || | | | | | ||||| ||||| || ||||| || | || | | | Sbjct 259837 TGGCAAACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTAGTGAG-T 259895 Query 13613 TAATAATGTCATTAG--AAGGAGGATATTTTAGATGTTTAAAA-ATTAAACACGCAAAAT 13669 || || | | | || || | || |||| || | | |||||| ||||||| Sbjct 259896 GAACAACTTGTTGCGGCAATTTGGTAAACTTCAATGTGGAATATAATAAACAGGCAAAAT 259955 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 || || | || ||||| | || | ||| || || |||| || || ||||| | Sbjct 259956 CAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCAGGCATGA 260015 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 || ||||| || |||||||| || | | ||| || || || ||||| || || |||| Sbjct 260016 GACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATACCTTCAA 260075 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA-TGCTTTTTTGTTTGATATCCATTTT 13848 | |||||| || | || ||||| |||| | | || || ||||| |||||| Sbjct 260076 CACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTA--TTGAT--CCATTTC 260131 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 ||||||| | || |||| | | | | || || || |||||||| ||| | Sbjct 260132 ATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAACAAACGA 260191 Query 13909 T--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 | | |||||||| | ||| | | | || ||||| ||| ||||||||||||| | Sbjct 260192 TGTCTTTCTCTTTGATCCTTTA--TCAAAGTTTCAATGAGTGTACTATACATTTCAGCAT 260249 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 | || ||||| ||||| || || ||||| || |||||||| ||||||| |||||||| Sbjct 260250 GGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTTGTACCT 260309 Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | | |||| || ||| |||||||| |||||||| || || ||||| || | Sbjct 260310 CAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCAAAGAAAG 260369 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145 | || | | || ||||||| ||| || || ||| || | |||| | | | | Sbjct 260370 CTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAG-GTGGTCCATTGTGTAATA 260428 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 || | |||||| ||||| ||| | ||||| || || | || || ||||||||| Sbjct 260429 TCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTATACATT 260488 Query 14206 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TTGAAGATGTTTCTTTAAG 14264 |||| || | | |||| | ||| || | ||||| | || ||| || ||| ||| Sbjct 260489 TCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGATTTTCCTTCAAG 260548 Query 14265 A 14265 | Sbjct 260549 A 260549 >seq231 Length=8293 Score = 138 bits (152), Expect = 1e-27 Identities = 358/533 (67%), Gaps = 17/533 (3%) Strand=Plus/Minus Query 13743 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 |||||| || |||| | || ||| || ||||| |||||||| || ||||| || Sbjct 1394 TAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGC 1335 Query 13803 TATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | | || ||| ||||| | || | | | | |||||||| ||||| | || Sbjct 1334 CAACAATCTTTCAGCAAACAAA--TTCTCAGAATTA-ATCCATTTCAATGCCCAGTTAGC 1278 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG--TTCCTTCTCTTTA 13920 ||| |||| || | | ||| || || |||| |||| | | ||| |||||||| Sbjct 1277 TTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTTTG 1218 Query 13921 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 || || ||| || ||||| || ||||||||||||| || || ||||| || Sbjct 1217 GTCTTT--AATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATG 1160 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTT 14040 || || ||||| ||||| |||||||| ||||||| ||| || | | ||| | Sbjct 1159 GCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGT 1100 Query 14041 TCTGCCA-AG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14098 | | || || |||||||| ||||| |||||||| || ||||| || |||| | | | Sbjct 1099 T--GACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGTCT 1042 Query 14099 TAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14158 | || || | ||| || | | ||||||||||| ||| || | || ||| | ||||| Sbjct 1041 TGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGAT 982 Query 14159 CTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTT 14218 | || || || |||||||| || ||| | | ||||| |||||| |||| ||| || Sbjct 981 CAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATT--TT 924 Query 14219 TATATAAT--ATAGGAAAAACTACAAATC-TTGAAGATGTTTCTTTAAGAATT 14268 ||||| | ||||| | ||||| | ||| ||| ||||||| || ||| Sbjct 923 AGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGAT-TTTCTTTGAGGATT 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584109829760