Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq38 122 7e-23 seq27 104 2e-17 seq52 102 6e-17 seq84 91.5 1e-13 seq10 87.8 1e-12 seq14 84.2 2e-11 seq36 82.4 6e-11 >seq38 Length=381539 Score = 122 bits (134), Expect = 7e-23 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| |||||||| || | ||| |||||||| | || ||||||||| Sbjct 330693 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGAATGTTATAATCGGAC 330634 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||||||||| || ||||||||||| || |||||||| | || Sbjct 330633 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 330574 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| |||| ||||| | ||| ||| || | ||||| Sbjct 330573 ATTCCTTCTTTGTCTTGAATCTTACTC-TTGACATTTTCAATTGTATCATTGGATTCGAC 330515 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTT 43121 || | || ||||| ||||| |||| ||||| || ||||||||||| | | | | || Sbjct 330514 TTCCAAAGTGATAGTCTTTCCAGTTAATGTTTTAACGAAAATTTGCATCGTGTAATTATT 330455 Query 43122 ATTTGT 43127 ||| || Sbjct 330454 ATTAGT 330449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || || ||||| | ||| || ||||| | ||||||||| ||| Sbjct 331149 CCACCTCTCAATCTCAAAACTAAATGAAGAGTTGATTCTTTTTGGATATTGTAATCAGAC 331090 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | |||| || | |||||| || ||||| || | || |||||||| | || Sbjct 331089 AATGTTCTTCCGTCTTCTAGTTGTTTACCAGCAAATATAAGTCTTTGTTGATCTGGTGGG 331030 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | |||||| || || ||| | || | ||||| | ||| ||| || | || Sbjct 331029 ATACCTTCCTTATCT-TGA--ATCTTTGACTTGACATTTTCAATTGTATCATTGGATTCA 330973 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 330972 ACTTCCAATGTAATGGTTTTACCAGTTAATGTTTTAACGAAAATTTGCAT 330923 >seq27 Length=417575 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | || |||||||| | |||||||| ||| Sbjct 23477 CCACCTCTCAATCTCAATACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGAC 23536 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||||||||| || || |||||||||| |||||||| | || Sbjct 23537 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGG 23596 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| || || | ||| |||||| | |||||| Sbjct 23597 ATTCCTTCCTTATCTTGGATCTTAGACTTAACATTTTCAATTGTGTCATTGGACTCGACT 23656 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| |||| |||||| || ||||||||||| Sbjct 23657 TCCAATGTAATGGTCTTTCCTGTTAAAGTTTTAACGAAAATTTGCAT 23703 Score = 100 bits (110), Expect = 2e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||| ||||| || | | | || ||||||||||| || || ||| Sbjct 23969 TCCTTTTGAATATTGTAATCAGACAAGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAA 24028 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 ||||||| |||||||| | || | |||||| || || ||| | ||| || || Sbjct 24029 ATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTATC-TTGAATTTTGCTC-TTAACGT 24086 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| ||||| | || || || | || |||||||| || |||| ||||| | Sbjct 24087 TTTCAATGGTGTCATTGGATTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAA 24146 Query 43097 CAAAAATTTGCATTTT 43112 | |||||||||||||| Sbjct 24147 CGAAAATTTGCATTTT 24162 >seq52 Length=331721 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| ||||| || ||||| | | | || || |||||||| || |||||| Sbjct 165113 TCCTTTTGAATATTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTACCAGCAAAA 165172 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| |||||||| | || | |||||| || || ||| ||| || | Sbjct 165173 ATCAATCTTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGATTTAACATTT 165232 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||| || | |||||| || | || || || ||||| |||| |||||| || Sbjct 165233 TCAATTGTATCATTGGACTCGACTTCCAATGTAATTGTCTTTCCTGTTAAAGTTTTGACG 165292 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 165293 AAAATTTGCAT 165303 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || |||||| |||||||| | ||| |||||||| | ||| || || || Sbjct 185922 CCACCTCTCAATCTTAAAACCAAATGCAAAGTTGATTCCTTTTGAATATTATAGTCTGAG 185863 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| || ||||| || | || |||||||| | || Sbjct 185862 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 185803 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| ||| || | ||| ||| || | |||||| Sbjct 185802 ATACCTTCCTTATCTTGAATCTTTGATTTAACATTTTCAATTGTATCATTGGACTCGACT 185743 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| |||| |||||| || ||||||||||| Sbjct 185742 TCCAATGTAATTGTCTTTCCTGTTAAAGTTTTGACGAAAATTTGCAT 185696 >seq84 Length=160583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | |||||| ||||| ||||| | ||| |||||||| | ||||||||| Sbjct 128738 CCTCCTCTCAGTCTCAACACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACTA 128797 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || ||||||||||| || ||| |||||||||| |||||||| | || Sbjct 128798 ACTGTTCTTCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGATGGA 128857 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | ||| | |||| || || | || | Sbjct 128858 ATTCCCTCCTTATCAAATATCTTTTGTTTCAAATGTTCAACAGTATCATTCGATTCCATT 128917 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| ||||| ||||| ||||||| ||||||| Sbjct 128918 TCAATTGTAATTGTCTTTCCAGTTAGGGTTTTTACAAAAAGTTGCATT 128965 >seq10 Length=665159 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| |||||||| ||||| | | | || || |||||||| || || ||| Sbjct 187981 TCCTTTTGAATATTATAATCGGATAATGTTCTTCCATCTTCTAATTGTTTACCAGCGAAA 188040 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| || |||||||| | || | |||||| || || ||| |||||| | Sbjct 188041 ATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATCTTTGATTTGACATTT 188100 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || | || || || | || || || ||||| |||| ||||| || Sbjct 188101 TCAATAGTATCATTGGATTCAACTTCCAATGTAATTGTCTTTCCTGTTAATGTTTTGACG 188160 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 188161 AAAATTTGCAT 188171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| || || || | || | | | || ||||||||||| || || ||| Sbjct 188665 TCCTTTTGAATATTATAGTCAGAAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAA 188724 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCT 43037 ||||| || |||||||| | || | |||||| || || ||| ||| || || | Sbjct 188725 ATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTGCTC-TTAACATT 188783 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || ||| | || || |||| || ||||| ||||| |||| ||||| || Sbjct 188784 TTCAATAGTATCGTTGGATTCAACTTCTAAAGTGATAGTCTTTCCTGTTAATGTTTTAAC 188843 Query 43098 AAAAATTTGCATTTTCTTA 43116 |||||||||||| | ||| Sbjct 188844 GAAAATTTGCATTGTGTTA 188862 >seq14 Length=782252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 42873 CCAATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATT 42932 |||| || |||||| | || ||| || || ||||| | ||| |||||||| | ||| Sbjct 722723 CCAAGGGTTGCCTCCTCTCAATCTCAATACTAAATGCACAGTTGAGTCCTTTTGAAGATT 722782 Query 42933 GTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTG 42992 |||||| | || | | || ||||||||||| || ||| |||||||||| ||||| Sbjct 722783 GTAATCATTAATGGTTCTGCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTG 722842 Query 42993 ATCGGCCGGCACACCTTCTTTTTC 43016 ||| | || | ||||||||| || Sbjct 722843 ATCTGAAGGAATACCTTCTTTATC 722866 >seq36 Length=416450 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || ||||| || | ||| |||||||| | |||||| || || | || | Sbjct 87093 AGTCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATATTGTAGTCTGAGAGAGTTCTA 87152 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||||||| || || || || ||||||| |||||||| | || | |||||| Sbjct 87153 CCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCC 87212 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| ||||| | ||| |||||| | ||||| || | || Sbjct 87213 TTGTCTTGGATCTTAGACTTGACGTTTTCAATAGTGTCGTTGGATTCGACTTCCAAAGTG 87272 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || || || || || ||||||||||| Sbjct 87273 ATAGTCTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 87310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365956013472