Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 255 8e-63 seq9 208 1e-48 seq231 174 2e-38 seq62 167 3e-36 >seq38 Length=381539 Score = 255 bits (282), Expect = 8e-63 Identities = 738/1122 (66%), Gaps = 14/1122 (1%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || || | | | ||||| | || ||||| || || |||||| | Sbjct 296174 TAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGAATGGAAGA 296115 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | || || || || || || |||||||| || | ||| || ||||||||||| Sbjct 296114 CGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTA 296055 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 ||| | | |||||| | || |||||||| |||| ||||| ||||| | | Sbjct 296054 AAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAA 295995 Query 71623 TTTCTGACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA---TC 71678 || | | | | | ||||| || || | || || | |||| | | | || Sbjct 295994 TTG-TAAGTGGCAATCTTGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTC 295936 Query 71679 T--ATTACAAACACGTTC-AAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 | ||| | | || || ||| |||| | || || ||||| || || || |||| || Sbjct 295935 TTCATTG-ACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAG 295877 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | | | ||| ||||||||||| || | ||| | |||||||||| || | |||| Sbjct 295876 GAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTT 295817 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||||||| ||| | ||||| | |||||| || | || | || ||||||||||| Sbjct 295816 GTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAA 295757 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCT 71914 | || | ||| ||||| || ||||| || ||||||| || | ||||| | Sbjct 295756 TTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCTTGGCCTTTC 295697 Query 71915 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 ||||||||| |||| ||||||||| | | ||| || || |||||| ||| | | | Sbjct 295696 CTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGAC 295637 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 | || |||||| ||||| | | |||||| || ||||||| || || |||| ||| | Sbjct 295636 CTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGA 295577 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 ||||||| | ||| | | | | |||| |||||| | ||| || || || || Sbjct 295576 AGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGT 295517 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 ||||||| | | ||| | || | | ||| ||||| ||||| |||||||| || |||| Sbjct 295516 GATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGG 295457 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | | ||| | || || || ||||| | ||||| || |||| ||| ||| Sbjct 295456 CAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAA 295397 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 |||||||||||||||| | |||||| |||| || || || || || || |||| Sbjct 295396 CTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAG 295337 Query 72275 TGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 || | ||||||| || ||| | ||| || || || || || || || | || | Sbjct 295336 AAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCAC 295277 Query 72335 ATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 | || |||| |||||||| || || | || ||||||| |||| || || ||| Sbjct 295276 A-AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAA 295218 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || | |||||| || ||| || ||||| || || || ||||| || || || Sbjct 295217 CAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATA 295158 Query 72454 AACCATTTTTC-AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 72512 || ||| | | |||| || || || | ||| ||| ||| || || | | || Sbjct 295157 AA-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTG 295099 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || |||| |||||||| ||||| || || |||||||| Sbjct 295098 GATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 208 bits (230), Expect = 1e-48 Identities = 581/878 (66%), Gaps = 25/878 (3%) Strand=Plus/Minus Query 41795 TTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 41854 || || ||||| || |||||||| | ||||| | | ||| |||| || ||||| Sbjct 333179 TTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGATATTCATCCAATCGAATGGATTT 333120 Query 41855 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA---TCTATCTGCGATGAAT 41911 | |||||||| |||| | |||| ||| ||||| ||| |||||| || | | | Sbjct 333119 GATGAGTTATAAATCTTTTCATATCC-AAT--AGAAACCAACAATCTATCAGCAACCATT 333063 Query 41912 TCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACA 41971 || |||||| || ||| | | || ||||||||| || | | |||||| | | || Sbjct 333062 TCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAAATCAACTGGTAAACTTTCA 333003 Query 41972 GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA 42031 | | |||||| | ||||| || || || | || || ||| || || | Sbjct 333002 CTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAGTGAATGAACTACTTGTTGA 332943 Query 42032 C-----TCGGTGGATACAATAAATGTTTAA-ACATCAAACATGCGAAATCGCAGTGCAGA 42085 | ||| || | ||||| || | | |||||||||||||| || | Sbjct 332942 GGTAATTTAGTGTATT---TCAATGTGGAATAGAGTAAACATGCGAAATCTGTATGTAAC 332886 Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || ||||| | | || ||||| || || || | | || ||||| || ||||| || Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 || | ||| || || || ||| |||||| ||||| ||||| || || ||||| Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCG 42262 || | | ||| || || ||| | | ||| | ||||| || ||||| | Sbjct 332765 GCCAACAATCTTTCAGCA-AACAA--ATTCTCAGAATTAATCCATTTCAATGCCCAGTTA 332709 Query 42263 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 42322 || ||||||| || | || | || || ||||||| ||| ||| ||| |||| | Sbjct 332708 GCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTT 332649 Query 42323 CTATCTTTAA-CATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 ||||||| || | || || || | | |||||||||||| | |||||| |||||||| Sbjct 332648 TGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAAT 332590 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG 42441 ||| || |||||||| ||||||||||| || || | || || |||| || ||| | Sbjct 332589 GGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTG 332530 Query 42442 TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT-T 42500 || | || |||||| || || ||||| |||||||||||||| || |||| || ||| | Sbjct 332529 TTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCAC-TGTCT 332471 Query 42501 TTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATAT 42560 | || |||| || ||| | | | | ||| | ||| ||| | ||||| | | || Sbjct 332470 TGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGAT 332411 Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620 | || || || || ||||| ||||| || || |||||| ||||| | ||| || | | Sbjct 332410 CAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATTTTAG 332351 Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 |||| |||| ||| || | |||||| | || |||||| Sbjct 332350 GATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 332313 >seq231 Length=8293 Score = 174 bits (192), Expect = 2e-38 Identities = 286/407 (70%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| | || ||||||| || | || | || || ||||||| ||| ||| ||| Sbjct 1288 GCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTT 1229 Query 42314 ttttCATTACTATCTTTAA-CATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| | ||||||| || | || || || | | |||||||||||| | |||||| Sbjct 1228 CTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTTCAGCATGAAT 1170 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 ||||||||||| || |||||||| ||||||||||| || || | || || |||| || Sbjct 1169 ATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGC 1110 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 ||| ||| | || |||||| || || ||||| |||||||| ||||| || |||| Sbjct 1109 CATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAG 1050 Query 42493 TACATGT-TTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTT 42551 || ||| || || |||| || ||| | | | | ||| | ||| ||| | ||||| Sbjct 1049 CAC-TGTCTTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAG 991 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | | ||| || || || || ||||| ||||| || || |||||| ||||| | || Sbjct 990 TGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCC 931 Query 42612 AGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 | || | | |||| |||| ||| || | |||||| | || |||||| Sbjct 930 ACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 884 >seq62 Length=286411 Score = 167 bits (184), Expect = 3e-36 Identities = 406/606 (67%), Gaps = 18/606 (3%) Strand=Plus/Plus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 ||||| || ||||| ||| | || ||||| | |||||||| ||||| || | Sbjct 259943 AAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCC 260002 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 | || ||||| || ||||| || || | |||||| || || || || ||||| ||| Sbjct 260003 AAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAG 260062 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGC-AATAAGTCTCTCTCCA--TAACCGGCACTGTCA 42238 || || ||||| || |||||||| ||||| | || || ||| | | ||| Sbjct 260063 AAAATACCTTCAACACAAGCAAAGGCCAATAAACGT-TCGGCAAATAA-----ATTCTCA 260116 Query 42239 TGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | ||||| || ||||||| |||||||||| |||| | || | || || ||| Sbjct 260117 TTATTGATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATG 260176 Query 42296 GCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| || | ||| || ||| || || | ||||| || | || || || | | Sbjct 260177 GCATTGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCAAA-GTTTCAATGAGTGTA 260233 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||||||||| | ||| || |||||||| || || || || |||||||||||||| || Sbjct 260234 CTATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCT 260293 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | | ||||| || | |||| ||| |||||||| || || || ||||| Sbjct 260294 TCTGGTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCG 260353 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 || ||||| || || || ||| || ||||| | || ||||| ||||| || | Sbjct 260354 GACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTG 260413 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 |||| | | ||||| | | ||| |||||||| | ||||| || ||||| Sbjct 260414 GTCCATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG 260473 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 ||||| |||||||| | ||| || | |||||| | ||||| | ||||| | | | Sbjct 260474 GCCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGT 260533 Query 42653 GGATTT 42658 |||||| Sbjct 260534 GGATTT 260539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132622835840