Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq81 96.9 3e-15 seq10 95.1 1e-14 seq165 91.5 1e-13 seq48 91.5 1e-13 seq42 91.5 1e-13 seq28 91.5 1e-13 seq27 89.7 4e-13 seq52 87.8 1e-12 seq79 82.4 6e-11 >seq81 Length=182562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 175/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 18792 GAAT-TATAATATTTTATTGTTTT--CCTCCTCGCAACCTTAACACCATGTGCAACGTAG 18848 |||| ||||||||||| | || || |||| ||| || || || | |||| || | Sbjct 52416 GAATCTATAATATTTTGCTAACTTAACCACCTCTCAATCTCAATACTAAATGCACAGTTG 52357 Query 18849 ACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCAT 18908 | |||||||||| ||||||||| | || ||| | | || |||| || ||||| |||| Sbjct 52356 AATCCTTTTGAAGATTGTAATCACCAATAGTTCTTCCATCTTCCAATTGCTTACCGGCAT 52297 Query 18909 AAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCT 18968 |||| | || || ||||| || | || || || || || || ||||| | | Sbjct 52296 AAATCAATCGTTGTTGATCTGAAGGAATACCTTCCTTATCAAATATCTTTTGTTTCATAT 52237 Query 18969 GGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGA 19028 | |||||||| | ||| |||| | || || || || || ||||||||||| | Sbjct 52236 TCTCAACAGTATCATTCGATTCCATTTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTA 52177 Query 19029 CAAAAATTTGCATT 19042 |||||| ||||||| Sbjct 52176 CAAAAAGTTGCATT 52163 >seq10 Length=665159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | |||||| ||||| |||||||||||||||||||| | Sbjct 188173 CCACCTCTCAATCTCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTGTAATCAGAT 188232 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || | |||||||| ||| |||| | ||| || ||||| || Sbjct 188233 AAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 188292 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| || || | | | |||||| | || | Sbjct 188293 ATTCCTTCTTTGTCTTGAATTTTAGACTTGACATTTTCAATAGTATCATTTGATTCAACT 188352 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || |||||||| || | ||||| || ||||||||||| Sbjct 188353 TCAAGAGTGATAGTTTTACCAGTGAGTGTTTTAACGAAAATTTGCAT 188399 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | |||| || || |||||||||| ||||||||| | Sbjct 273072 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 273131 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 || ||| | | || |||| || ||||| |||||||| | || || ||||| || Sbjct 273132 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 273191 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || ||||| | | | |||||| | | ||| || Sbjct 273192 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTAGCATTCGATTCCATT 273251 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || || ||||||||||| ||||||| ||||||| Sbjct 273252 TCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCATT 273299 >seq165 Length=11935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | |||| || || |||||||||| ||||||||| | Sbjct 10112 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 10171 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 || ||| | | || |||| || ||||| |||||||| | || || ||||| || Sbjct 10172 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 10231 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || ||||| | | | |||||||| | ||| || Sbjct 10232 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATTCCATT 10291 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || || ||||||||||| ||||||| ||||||| Sbjct 10292 TCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCATT 10339 >seq48 Length=342059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | |||| || || |||||||||| ||||||||| | Sbjct 178224 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 178165 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 || ||| | | || |||| || ||||| |||||||| | || || ||||| || Sbjct 178164 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 178105 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || ||||| | | | |||||||| | ||| || Sbjct 178104 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATTCCATT 178045 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || || ||||||||||| ||||||| ||||||| Sbjct 178044 TCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCATT 177997 >seq42 Length=358576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | |||| || || |||||||||| ||||||||| | Sbjct 95071 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 95012 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 || ||| | | || |||| || ||||| |||||||| | || || ||||| || Sbjct 95011 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 94952 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || ||||| | | | |||||||| | ||| || Sbjct 94951 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATTCCATT 94892 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || || ||||||||||| ||||||| ||||||| Sbjct 94891 TCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCATT 94844 >seq28 Length=413107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | |||| || || |||||||||| ||||||||| | Sbjct 235287 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 235228 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 || ||| | | || |||| || ||||| |||||||| | || || ||||| || Sbjct 235227 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 235168 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || ||||| | | | |||||||| | ||| || Sbjct 235167 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATTCCATT 235108 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || || ||||||||||| ||||||| ||||||| Sbjct 235107 TCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCATT 235060 >seq27 Length=417575 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 18802 ATTTTATTGTTTT-CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAA 18860 |||||||| || || |||| ||| || || |||| ||| | || || |||||||||| Sbjct 23235 ATTTTATTTAGTTACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAA 23294 Query 18861 TATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCT 18920 | |||||||| | | ||| | | || || | || ||||| ||| | || ||||| | Sbjct 23295 TGTTGTAATCAGAAAGGGTTCTTCCATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTT 23354 Query 18921 GCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTAT 18980 | ||||| || | || || ||||| ||| || || || | | | ||||| Sbjct 23355 GTTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGACTTGACATTTTCAATAGTAT 23414 Query 18981 CGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCA 19040 | || || ||| | |||||| || ||||| || ||||||||||| || ||||||| Sbjct 23415 CATTAGATTCGACTTCAAGGGTAATTGTCTTACCAGTCAAAGTTTTGACGAAGATTTGCA 23474 Query 19041 T 19041 | Sbjct 23475 T 23475 >seq52 Length=331721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| ||||| || || ||||||||||| || || || | Sbjct 185466 CCACCTCTCAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAG 185407 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| |||||||| ||| | || ||||| || ||||| || Sbjct 185406 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGG 185347 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | | ||| ||| | || | Sbjct 185346 ATACCTTCCTTGTCTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTGATTCAACT 185287 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| || ||||| ||||| ||||| || |||||||||||| Sbjct 185286 TCCAATGTAATTGTCTTACCAGTTAATGTTTTAACGAAAATTTGCATT 185239 >seq79 Length=326815 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || || |||| ||| | || || |||||||||||||||||||| | || ||| | | Sbjct 172512 CTCAAAACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTTCTACCA 172571 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 || |||| || ||||| ||| | |||||||| || ||||| || | || || || Sbjct 172572 TCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTA 172631 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || ||| || || || | | | |||||| || || ||| | |||||| Sbjct 172632 TCTTGAATCTTGCTCTTAACATTTTCAATAGTATCATTAGATTCGACTTCAAGGGTAATT 172691 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || | ||| ||||| || |||||||| Sbjct 172692 GTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 172726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414568838756896