Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq62 179 3e-40 seq9 161 9e-35 seq231 100 2e-16 >seq62 Length=286411 Score = 179 bits (198), Expect = 3e-40 Identities = 558/845 (66%), Gaps = 28/845 (3%) Strand=Plus/Plus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAAC-GAAATATTTTCCA 12923 |||||| | |||| | |||||||| |||||||| || || ||||| |||||| | | || Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCA-CTAACAGAAATAATGTTCA 259715 Query 12924 TAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC---ACCCTAATTCTAGTAACA 12980 | ||||||| |||||| | | ||| ||| | ||| | || | || || | Sbjct 259716 TCCAATCGAATGGATTT---GGAGAATTGTAAATCTTATCATAACCAAGGGATACCAAAA 259772 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 ||| |||||||| | || ||||| |||| ||||||| | ||||||| || || || | Sbjct 259773 GTCTATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAAT 259832 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 ||| |||| | ||| | || | ||||| || ||||| ||||| ||||| || Sbjct 259833 CTACTGGCAAACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTA-GT 259891 Query 13101 CTCTTATTACGTTCTCTAATGGAGGATTTGATAGA-TGC----TTAAACATCATA--CAT 13153 | | | || | | | | ||||| || | | | | || || ||| || Sbjct 259892 GAGTGAACAACTTGT-TGCGGCA--ATTTGGTAAACTTCAATGTGGAATATAATAAACAG 259948 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||||||| ||| ||||||||||| | |||| || || || |||| | ||| Sbjct 259949 GCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCA 260008 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| || || ||||| || | |||||| || | | || ||||| || || || || Sbjct 260009 GGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATA 260068 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 |||||||| ||||| || | || | ||| || | || ||| | | | | ||| Sbjct 260069 CCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAA--TAA-ATTCTCATTATTGATC 260125 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || || | ||||| ||| || | || || | | | | || || || || || Sbjct 260126 CATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAAC 260185 Query 13394 AAATAAtttttttC-CTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 ||| || | |||| ||| || || || |||| || || | | |||||||||| Sbjct 260186 AAACGATGTCTTTCTCTT--TGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTT 260243 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | | ||| |||||||| || || ||||||||||| || |||||||| || |||| || | Sbjct 260244 CAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTT 260303 Query 13512 GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 | || || | |||| || || ||||| || || || ||||| ||||||| Sbjct 260304 GTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCAA 260363 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 | ||||| | | ||| ||||| | || ||||||| || ||| | ||| | || Sbjct 260364 AGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCCATTGTG 260423 Query 13632 GAAAATC-TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 || ||| | ||| | ||| || || ||| | ||||| || || || | ||||||||| Sbjct 260424 TAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTA 260482 Query 13691 TACAT 13695 ||||| Sbjct 260483 TACAT 260487 >seq9 Length=695587 Score = 161 bits (178), Expect = 9e-35 Identities = 593/912 (65%), Gaps = 34/912 (4%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTT 12860 ||||||||||| ||| | || || | ||| | |||||| ||||| | | ||| Sbjct 333259 TTTAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTGGACATTATA----TTT 333204 Query 12861 T--TTG--ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAAC-GAAAT 12915 ||| |||||| | |||| | || |||||||||||||| ||||| || || || || Sbjct 333203 GCCTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCA-CTGACAGATAT 333145 Query 12916 ATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAG 12975 | | ||| ||||||| |||||| || ||| |||| | | || | | Sbjct 333144 GATATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCCAATAGAAAC 333085 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 |||||||| |||||||| | || || || |||| |||||| || |||||||| || Sbjct 333084 CAACAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAAT 333025 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 || | || || | | ||| | | ||| | || || || ||||| ||||| |||| Sbjct 333024 CAAATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTC-ATAAA 332966 Query 13096 TATGT-------CT-CTTATT-ACGTTCTCTAATGGAGGATTTGATAGATGCTTAA-ACA 13145 | || || ||| || | || | || || | ||| | ||| || | | Sbjct 332965 CAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTA---TTTCA---ATGTGGAATAGA 332912 Query 13146 TCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATG 13205 | |||||| ||||| || || |||||||| | | ||| | || || || |||| Sbjct 332911 GTAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATG 332852 Query 13206 TTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaa 13265 || ||| ||||| || || ||||| || | ||| || || | | ||| || || | Sbjct 332851 ATAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGA 332792 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC 13325 | || ||||| || || |||||| || | ||| |||||| || || | || | | Sbjct 332791 AGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAA---TTCTCAG 332735 Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 | ||||| || |||||||| ||||| | || ||| | | | || || | Sbjct 332734 AATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGG 332675 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 | | ||||| | |||| |||| | |||| ||| ||| || || | |||| Sbjct 332674 CATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTAT 332615 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 ||||||| | |||||||||||| || || ||||| || ||||| |||||||| || |||| Sbjct 332614 ACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTG 332555 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 ||| ||||||| | ||| || || ||||| || || || || ||||| | Sbjct 332554 GTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGG 332495 Query 13566 CAGCaaaaaaaGCAAGTA-TGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAAC 13624 | ||||| || || || | ||| ||| || || | || ||| || | ||| | Sbjct 332494 CTGCAAAGAAGGCCAGCACTGT-CTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCC 332436 Query 13625 CAATCTGGAAAATC-TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683 || || | | ||| | ||| | ||| |||||||| || ||||| || ||||| | | Sbjct 332435 CATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGT 332377 Query 13684 CTTCTTATACAT 13695 ||| || ||||| Sbjct 332376 CTTTTTGTACAT 332365 >seq231 Length=8293 Score = 100 bits (110), Expect = 2e-16 Identities = 289/439 (66%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || || || || ||||| || || |||||| || | ||| |||||| || || | Sbjct 1369 CCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAA--- 1313 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 || | | | ||||| || |||||||| ||||| | || ||| | | | Sbjct 1312 TTCTCAGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTA 1253 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || || || | ||||| | |||| |||| | |||| ||| ||| || || | Sbjct 1252 TCAATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGA 1193 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 ||||||||||| | |||||||||||| || || ||||| || ||||| |||||||| Sbjct 1192 GTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTT 1133 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || |||| ||| ||||||| | ||| || || ||||| || || || || Sbjct 1132 GCTTCTGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCA 1073 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTA-TGTGCTTAATAAAttttttttCGTTTTCTGACAA 13617 ||||| || ||||| || || || | ||| ||| || || | || ||| || | Sbjct 1072 TCACTGGCCGCAAAGAAGGCCAGCACTGT-CTTGATGAAATGTTGTTCATTAGAGTTGAG 1014 Query 13618 CTTTAACCAATCTGGAAAATC-TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676 ||| ||| || | | ||| | ||| | ||| |||||||| || ||||| || |||| Sbjct 1013 TTTTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAG 955 Query 13677 CAACAGCCTTCTTATACAT 13695 | | | ||| || ||||| Sbjct 954 CCATTGTCTTTTTGTACAT 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978281963168