Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq102 282 5e-71 seq28 152 6e-32 >seq102 Length=34929 Score = 282 bits (312), Expect = 5e-71 Identities = 426/602 (71%), Gaps = 8/602 (1%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||| ||| | || || ||||||| ||||| ||| | ||| || | |||||||| Sbjct 32596 TTGTTTTTTCAAAGGTTCAATATGATTCTTATAAACATGTGTATCACCCAATGTATGAAT 32537 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||| ||||| ||||| | || | | |||| || ||||| ||||||||| ||||| || Sbjct 32536 AAAATCACCAGGTTTTAAATTACAAACTTGTGCCATTAATCTTGTTAATAAAGCATATGA 32477 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989 || | |||||| || ||||||||||||||||| |||||||||||| ||||||| Sbjct 32476 TGCAATATTAAATGGAACACCTAATCCCATATCACATGATCTTTGATACATTTGACAACT 32417 Query 6990 TAA---AATATTGTCTATAGCAT---AAAATTGACACAATACATGACATGGAGGTAAAAC 7043 ||| | || | ||| || | |||||||||||| || |||||| || ||||| | Sbjct 32416 TAATTCATTAGTATCTGTATCTACCCAAAATTGACACATTAAATGACAAGGTGGTAATGC 32357 Query 7044 AGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATT 7103 | | || ||| ||| |||||| |||| | || ||||||||||| | ||||||| Sbjct 32356 CATATTAGGTAAATCTGATACATTCCATGCAGATAATATAATACGTCTATTAGTTGGATT 32297 Query 7104 TGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGT 7163 | ||||| || ||| | | | |||||||| | |||| | | ||||| || Sbjct 32296 ATTCTTTAAAGTTTCAATACATTTCTTCAATTGATCAACTCCCTTATTTGTATAATCTGT 32237 Query 7164 ATGACAATTTATATAATTAGCT-CCAAAATGTCTCCATTGAAACCCATAAATAGGACCTA 7222 ||| |||| ||| | | || || |||||||||||||||| ||||||| |||||| | Sbjct 32236 ATGCATATTTTCATA-TGAACTACCCCAATGTCTCCATTGAAAACCATAAACAGGACCCA 32178 Query 7223 AATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAG 7282 |||| |||||||||| | |||||| ||| || ||||| | | ||||||| Sbjct 32177 AATCCATCTCTTCACGATTCTCAAATCCCAATGAATCTAAATATTCTCTCGATCCATTTC 32118 Query 7283 CATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGA 7342 ||||||||||||| | | || || |||||| || || ||||||| ||| || || Sbjct 32117 CATCCCAAATATGAATATCTTGTTCAGATAAAATTTTAGCATTTGTACTTCCAGAAATGA 32058 Query 7343 ACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGA 7402 |||| || | ||||| | | || |||||| | |||||| || || ||||| || | Sbjct 32057 ACCAAAATAATTCTTTAGCAACACCTTTCCAAAATACTCTTTTAGTTGTTAATAATGGAA 31998 Query 7403 AT 7404 || Sbjct 31997 AT 31996 >seq28 Length=413107 Score = 152 bits (168), Expect = 6e-32 Identities = 364/547 (67%), Gaps = 24/547 (4%) Strand=Plus/Plus Query 164447 TTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCT 164506 |||||||| |||| ||||||||| | ||| ||| | || |||| | || Sbjct 383983 TTTTCAGAAGAGCTTTTGCTTCTCGTATTTATCCAGCTGAAGTTATTGCAAAACTTGGTG 384042 Query 164507 GTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGG 164566 |||||| | || || ||| | | ||||||||||||| ||||||||| | | | Sbjct 384043 TTAAACACGTTAAGGGTATTATTCTTTTTGGACCTCCTGGTACAGGTAAAACACTTGTTG 384102 Query 164567 CTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTG 164623 | || |||| | || |||| ||| | || || ||| || |||| ||||| | Sbjct 384103 CCAGACAAATTGGTAAAA-TTTTGAATTGTAAGGAACCA--AAAGTTATTAACGGTCCAG 384159 Query 164624 AATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGG 164683 || | ||||| || || || ||| | ||||||| ||| |||||||||| ||| || | Sbjct 384160 AAGTTTTGAATAAGTACGTTGGTCAATCAGAAGAAAATATTAGAAAGTTATTTGCTGATG 384219 Query 164684 CTGAAGAAGAA---CAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTG 164740 |||||| ||| ||| | || | || | | ||| || | || | ||| |||| | Sbjct 384220 CTGAAGCTGAATTCCAAGAAAAGGGAGAT---GACAGTCAACTTCACTTGATTATTTTCG 384276 Query 164741 ATGAGATAGATGCTCTTTGCAAAAAACGTGGT---------GATAATAT---TATTCATG 164788 | || | |||||| |||| ||| |||||||| ||| || | |||| | Sbjct 384277 ACGAATTGGATGCTATTTGTAAACAACGTGGTACTGTTAGAGATGGTACCGGTGTTCAAG 384336 Query 164789 ATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTT 164848 || | | ||||| || ||| | ||| || |||||||| | || | || ||||||| Sbjct 384337 ATTCTATTGTTAACCAATTGTTGAGTAAGATTGATGGTGTCAACTCACTTAACAATATTT 384396 Query 164849 TAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTC 164908 | ||| | |||||||||||| || || | |||||||| ||| | ||||| || ||| Sbjct 384397 TGATTATTGGTATGACCAACAGATTGGACATGATTGATGAAGCTCTTTTACGTCCAGGTA 384456 Query 164909 GATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAA 164968 |||| ||| | |||| ||||| || ||||| || | | || || | ||||| || | Sbjct 384457 GATTTGAAGTTCAAATGGAAATTGGTTTACCAGATGAGAATGGTCGTTTACAAATCTTGA 384516 Query 164969 AAGTTCA 164975 | |||| Sbjct 384517 AGATTCA 384523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595866160454400