Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq61 104 4e-18 seq55 102 1e-17 seq12 91.5 2e-14 >seq61 Length=290827 Score = 104 bits (114), Expect = 4e-18 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || |||||||||||||| | | |||| | | ||||| | Sbjct 130674 GAGATAACATTGCCGGTATTACCAAGCCAGCTATTAGAAGATTGGCAAGAAGAGGTGGTG 130733 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | |||||| |||| || || | |||| ||| ||||||| ||| | Sbjct 130734 TTAAGCGTATTTCTGGACAAATCTACGATGAAACTCGTACTGTCTTGAAGAATTTCTTGG 130793 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | |||||| |||||| | ||| || || ||||||| | | |||||||| || | Sbjct 130794 AAAATGTTATCAGAGATGCTGTTACCTACACTGAACACGCTAGAAGAAAGACTGTTACTT 130853 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| ||||| | ||||| | | | || ||||| ||| || Sbjct 130854 CAATGGATGTTGTTTATGCCTTGAAGAGACAAGGAAGAACACTCTACGGTTTCGGATATT 130913 Query 16698 AA 16699 || Sbjct 130914 AA 130915 >seq55 Length=331038 Score = 102 bits (112), Expect = 1e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || |||||||||||||| | | |||| | | ||||| | Sbjct 166171 GAGATAACATTGCCGGTATTACCAAGCCAGCTATTAGAAGATTGGCAAGAAGAGGTGGTG 166230 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| |||| || || | |||| ||| ||||||| ||| | Sbjct 166231 TTAAGCGTATTTCTGGTCAAATCTACGATGAAACTCGTACTGTCTTGAAGAATTTCTTGG 166290 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | |||||| |||||| | ||||| || ||||||| | | |||||||| || | Sbjct 166291 AAAATGTTATCAGAGATGCTGTTACTTATACTGAACACGCTAGAAGAAAGACTGTTACAT 166350 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 | |||||| | |||||||| ||||| | ||||| Sbjct 166351 CAATGGATGTTGTCTATGCTTTGAAGAGACAAGG 166384 >seq12 Length=602266 Score = 91.5 bits (100), Expect = 2e-14 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || || || |||||||| || | || |||| | | ||||| || || ||| ||||| Sbjct 70828 GGCATTACAAAGCCAGCCATTAGGCGATTGGCCAGAAGAGGTGGTGTGAAACGTATCTCT 70769 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 ||| ||||||| || | | | |||||||||| ||| | || |||| Sbjct 70768 GGACAAATCTATGATGAAACCAGAGGAGTTTTGAAGAATTTCTTGGAGGGAATTATTAGA 70709 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 |||||| | |||||| ||||| || | | | || ||||| || || |||||||| ||| Sbjct 70708 GATGCTGTTACCTATACAGAGCATGCCAGAAGGAAAACTGTAACATCGATGGATATTGTC 70649 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 ||| |||||| | | || || | | | |||||||||||| |||||| Sbjct 70648 TATTCATTGAGAAGACATGGAAGAACTCTGTATGGTTTTGGACATTAATC 70599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074483183312