Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq66 223 6e-53 seq8 187 4e-42 >seq66 Length=243952 Score = 223 bits (246), Expect = 6e-53 Identities = 425/617 (69%), Gaps = 22/617 (4%) Strand=Plus/Plus Query 193586 TTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAG---TTGAACC 193642 |||||| ||| | |||||| ||| ||| |||| | ||| | || || | || Sbjct 115421 TTATGGTGATTTGACTGATACTGGGAATCTTAT---TTCCATAATATCAAAGATTAAGCC 115477 Query 193643 TGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGA 193702 || ||| || |||||||| ||||||||| |||||||||||| |||||||||||| || Sbjct 115478 TGATGAAATTTATAATCTCGGTGCTCAATCTCATGTTAAAGTCAGCTTTGAGATGCCTGA 115537 Query 193703 GTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTT 193762 || ||| |||||||||||||| | || || | ||||| | ||||| ||||| | Sbjct 115538 ATACACTGCTAATGTTGATGCTGTTGGTACATTGAGAATGTTGGAAGCTATTCGTGCTTG 115597 Query 193763 GGGAATGGAGAAAGATG-TTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTG 193821 ||| | || ||||| | | | ||||| || ||| ||| |||||||| | Sbjct 115598 TGGATTAGA-AAAGAAGACAAGATTTTATCAAGCTAGTACTTCTGAATTGTATGGTTTGG 115656 Query 193822 TTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAG 193881 ||| || | || | | ||||||||| || || |||| || |||||||||| | | Sbjct 115657 TTCAAGAAATCCCCCAAAAAGAAACCACTCCTTTCTATCCTCGTTCTCCTTATGCTTGTG 115716 Query 193882 CAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTA 193941 ||||||||||| |||| ||||| ||| |||||| | || | | | || | | Sbjct 115717 CAAAGTTGTATAGTTACTGGATTGTCATTAATTATAGAGAAGCTT----ACAACATGTTT 115772 Query 193942 GTTCT----GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 | | | || ||||| |||||||||||| | |||||||| ||||||||||| Sbjct 115773 GCTTTGAACGGAATTCTTTTCAATCACGAAAGTATTAGAAGAGGACCAACATTTGTAACC 115832 Query 193998 CGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTT--TATC 194055 | ||||| || | | | || || | ||||||| | |||||| || ||| Sbjct 115833 AGAAAGATCACTATGGCTGTTGCTCGTATTCATCTTGGATTGC--AAGATTGTTTGTATT 115890 Query 194056 TTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGT 194115 | |||||| | ||||| | || |||||||| || || |||||||||||| |||| |||| Sbjct 115891 TGGGTAATTTGGATGCTGAAAGAGATTGGGGGCATGCCAAGGATTATGTTAAAGCTATGT 115950 Query 194116 GGTTAATGTTGCAACAGGATGAACCCGATGATTA-TGTGATTGCTACAGGTGAACAGTAT 194174 |||| ||| | ||||| || | || | ||||| |||| |||| || ||||| | | Sbjct 115951 GGTTGATGCTTCAACAAGAAAAGCCAGCCGATTACTGTG-TTGCCACTGGTGAGAAACAC 116009 Query 194175 TCTGTTAGAGACTTTGT 194191 |||||||| ||||| Sbjct 116010 AAGGTTAGAGAATTTGT 116026 Score = 158 bits (174), Expect = 2e-33 Identities = 386/566 (68%), Gaps = 28/566 (5%) Strand=Plus/Plus Query 193640 ACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCC 193699 ||||| ||| || || || || || |||||| |||||||||| | |||||| ||||| Sbjct 55294 ACCTGATGAAATATACAACCTGGGAGCTCAATCTCATGTTAAAATAAGCTTTGAAATGCC 55353 Query 193700 AGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTA-GAATACTTGAAGCAGTTCGT- 193757 || || || | |||||||||| | | || || |||| || | ||||||||| | || Sbjct 55354 TGAATACACAGCAAATGTTGATGGTATTGGTAC-CTTACGATTTCTTGAAGCAATCCGAG 55412 Query 193758 -ATGT----TGGGAATGGAGA-AAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTG 193811 |||| ||| || | ||| ||||| || ||| | || ||| | ||| | || Sbjct 55413 CATGTGGTTTGGAAACGAAGACAAGATTTT---ATCAAGCAAGCACAT--CAGAGT--TG 55465 Query 193812 TATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCT 193871 ||||| || | || | ||| | | |||||| || |||||| |||| || |||||| Sbjct 55466 TATGGCTTGGTACAAGAAATTCCTCAAAAAGAAACTACTCCATTTTATCCTCGATCTCCT 55525 Query 193872 TATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGA 193931 |||| | || |||||||| |||| ||||| | | || ||| | || | ||| Sbjct 55526 TATGCTTGCGCTAAGTTGTACAGTTACTGGATTGTTATTAACTATAGAGAAGCTTATAAC 55585 Query 193932 TTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAA--TCTCCAAGAAGAGGTGAGACAT 193989 | ||| ||||||||| |||||||| ||| | ||| | |||||| || | Sbjct 55586 ATGTTCGCCTTGAATGGTATTCTTTTCAATCATGAAAGTATCC--GTAGAGGTCCAACCT 55643 Query 193990 TTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTC 194049 ||||||| | || || ||| | || || || | | || | || || | | Sbjct 55644 TTGTAACAAGAAAAATCACAATGGCAGTAGCTCGTATTCATCTAGGTCTTCAAGAG-TGC 55702 Query 194050 TT-TATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAA 194108 || ||| | |||||| | ||||| | || |||||||| |||||||||||||| ||||| Sbjct 55703 TTGTATTTGGGTAATTTGGATGCTGAAAGAGATTGGGGCCACGCAAAGGATTACGTTGAG 55762 Query 194109 GCGATGTGGTTAATGTTGCAACAGGATGAACCCGAT--GATTA-TGTGATTGCTACAGGT 194165 || |||||||| ||| | ||||| || ||| || || || || |||| |||| || || Sbjct 55763 GCTATGTGGTTGATGCTCCAACAAGA-GAAGCC-ATCAGACTATTGTG-TTGCCACTGGA 55819 Query 194166 GAACAGTATTCTGTTAGAGACTTTGT 194191 ||| || | |||||||| ||||| Sbjct 55820 GAAAAGCACAAAGTTAGAGAATTTGT 55845 >seq8 Length=938756 Score = 187 bits (206), Expect = 4e-42 Identities = 384/560 (69%), Gaps = 16/560 (3%) Strand=Plus/Minus Query 193640 ACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCC 193699 ||| | ||| ||||| || | ||||||||| ||||||||||| ||||| ||||| Sbjct 717849 ACCAGATGAAATCTACAACTTGGGTGCTCAATCCCATGTTAAAGTCAGTTTTGAAATGCC 717790 Query 193700 AGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTAT 193759 || || ||| | |||||||||| | | || ||| | | || | ||||| ||||| Sbjct 717789 TGAATACACTGCCAATGTTGATGGTATTGGTACTTTGCGTATTTTGGAAGCCATTCGTGC 717730 Query 193760 GTTGGGAATGGAGAAAGATG-TTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTG 193818 | ||| |||| ||||| | | | ||||||| || ||| || ||| |||||||| Sbjct 717729 TTGTGGATTGGA-AAAGAAGACTAGATTCTATCAAGCTAGTACTAGTGAATTGTATGGTT 717671 Query 193819 GTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTG 193878 |||| || | ||||| | ||||||||| ||||| ||||||| ||||| |||| | Sbjct 717670 TAGTTCAAGAAATTCCACAAAAAGAAACCACTCCATTCTATCCACGTTCTCCATATGCTT 717611 Query 193879 TAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACG 193938 || |||||||| |||||||||| | | || ||| | || | || || | | Sbjct 717610 GCGCCAAGTTGTACAGTTATTGGATTGTTATCAACTATAGAGAAGCTTA-CAAT---ATG 717555 Query 193939 CTAGTTCT----GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 | | | | || ||||| |||||||| ||| | | | ||| || ||||| Sbjct 717554 TTTGCTTTGAACGGAATTCTTTTCAATCATGAAAGTATTCGTCGTGGTCCAACCTTTGTT 717495 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATT-CTT-T 194052 || | |||||||| | | | || || | | ||||| | |||||| ||| | Sbjct 717494 ACAAGAAAGATTACTATGGCTGTTGCTCGTATTCATCTCGGATTGC--AAGATTGCTTGT 717437 Query 194053 ATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 || | |||||| | ||||| | || ||||||||||| || ||||| ||||||||||| | Sbjct 717436 ATTTGGGTAATTTGGATGCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCA 717377 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTA-TGTGATTGCTACAGGTGAACAG 194171 ||||||| ||| | ||||| || | || | ||||| |||| |||| || |||||| | Sbjct 717376 TGTGGTTGATGCTCCAACAAGAAAAGCCAGCCGATTATTGTG-TTGCCACTGGTGAAAAA 717318 Query 194172 TATTCTGTTAGAGACTTTGT 194191 | |||||||| ||||| Sbjct 717317 CACAAAGTTAGAGAATTTGT 717298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807547285959040